RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	TRIL	Q7L0X0	811 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	PATL1	Q86TB9	770 aa	Known RBP	4.96	□□□□□ -1.62
CD44-223	ENST00000526553	PALB2	Q86YC2	1186 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	ELP5	Q8TE02	316 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	TMEM170A	Q8WVE7	144 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	RAB40A	Q8WXH6	277 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	HERVK_113	Q902F9	699 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	HSPH1	Q92598	858 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	ATOH1	Q92858	354 aa	Predicted RBP	4.96	□□□□□ -1.62
CD44-223	ENST00000526553	TMEM18	Q96B42	140 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	PHF21B	Q96EK2	531 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	SCLT1	Q96NL6	688 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	GFM1	Q96RP9	751 aa	Known RBP	4.96	□□□□□ -1.62
CD44-223	ENST00000526553	NAP1L4	Q99733	375 aa	Known RBP	4.96	□□□□□ -1.62
CD44-223	ENST00000526553	ZPBP	Q9BS86	351 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	LMAN2L	Q9H0V9	348 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	CLEC18A	A5D8T8	446 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	SH2D7	A6NKC9	451 aa	Predicted RBP	4.95	□□□□□ -1.62
CD44-223	ENST00000526553	HOXB6	P17509	224 aa	Known RBP	4.95	□□□□□ -1.62
CD44-223	ENST00000526553	HOXA11	P31270	313 aa	Predicted RBP	4.95	□□□□□ -1.62
CD44-223	ENST00000526553	CENPA	P49450	140 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	PMS2	P54278	862 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	ARSF	P54793	590 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	UBE3A	Q05086	875 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	SLC18A2	Q05940	514 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	CRYZ	Q08257	329 aa	Known RBP	4.95	□□□□□ -1.62
CD44-223	ENST00000526553	DSC1	Q08554	894 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	HNF4G	Q14541	408 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	RALBP1	Q15311	655 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	WDR45B	Q5MNZ6	344 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	C8orf82	Q6P1X6	216 aa	Predicted RBP	4.95	□□□□□ -1.62
CD44-223	ENST00000526553	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	4.95	□□□□□ -1.62
CD44-223	ENST00000526553	ZNF354C	Q86Y25	554 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	CLEC18C	Q8NCF0	446 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	MCPH1	Q8NEM0	835 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	EVI5L	Q96CN4	794 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	CD180	Q99467	661 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	CLSTN3	Q9BQT9	956 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	LHPP	Q9H008	270 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	TAOK3	Q9H2K8	898 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	WDR6	Q9NNW5	1121 aa	Known RBP	4.95	□□□□□ -1.62
CD44-223	ENST00000526553	RIC8A	Q9NPQ8	531 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	IFT80	Q9P2H3	777 aa	Predicted RBP	4.95	□□□□□ -1.62
CD44-223	ENST00000526553	ZNF580	Q9UK33	172 aa		4.95	□□□□□ -1.62
CD44-223	ENST00000526553	TRIP12	Q14669	1992 aa	Predicted RBP	4.95	□□□□□ -1.62
CD44-223	ENST00000526553	CTPS1	P17812	591 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	CCKBR	P32239	447 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	DCTD	P32321	178 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	THPO	P40225	353 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	LTB	Q06643	244 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	FBXO43	Q4G163	708 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	KIAA1161	Q6NSJ0	714 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	CRELD2	Q6UXH1	353 aa	Predicted RBP	4.94	□□□□□ -1.62
CD44-223	ENST00000526553	MON1B	Q7L1V2	547 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	4.94	□□□□□ -1.62
CD44-223	ENST00000526553	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	4.94	□□□□□ -1.62
CD44-223	ENST00000526553	LRRTM4	Q86VH4	590 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	CPO	Q8IVL8	374 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	ADHFE1	Q8IWW8	467 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	LSM14A	Q8ND56	463 aa	Known RBP	4.94	□□□□□ -1.62
CD44-223	ENST00000526553	DNAAF1	Q8NEP3	725 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	RFWD2	Q8NHY2	731 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	TBC1D22A	Q8WUA7	517 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	CNOT9	Q92600	299 aa	Known RBP	4.94	□□□□□ -1.62
CD44-223	ENST00000526553	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	4.94	□□□□□ -1.62
CD44-223	ENST00000526553	MAF1	Q9H063	256 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	MROH8	Q9H579	483 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	EPHX3	Q9H6B9	360 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	ALKBH4	Q9NXW9	302 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	LUZP4	Q9P127	313 aa		4.94	□□□□□ -1.62
CD44-223	ENST00000526553	C17orf113	A0A1B0GUU1	675 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	EIF3F	O00303	357 aa	Predicted RBP	4.93	□□□□□ -1.62
CD44-223	ENST00000526553	PER2	O15055	1255 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	ASAP2	O43150	1006 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	EIF5B	O60841	1220 aa	Known RBP	4.93	□□□□□ -1.62
CD44-223	ENST00000526553	CKMT1A	P12532	417 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	NAGA	P17050	411 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	CD72	P21854	359 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	PCYT1A	P49585	367 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	BLK	P51451	505 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	CCR5	P51681	352 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	NUDT6	P53370	316 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	CHRND	Q07001	517 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	FAM27E3	Q08E93	113 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	SHB	Q15464	509 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	TDRD12	Q587J7	1177 aa	Known RBP	4.93	□□□□□ -1.62
CD44-223	ENST00000526553	ATG9B	Q674R7	924 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	ATG16L1	Q676U5	607 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	IL20RB	Q6UXL0	311 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	CYP26C1	Q6V0L0	522 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	PRSS45	Q7RTY3	260 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	SPATA2L	Q8IUW3	424 aa	Predicted RBP	4.93	□□□□□ -1.62
CD44-223	ENST00000526553	ADAMTS14	Q8WXS8	1223 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	STAM	Q92783	540 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	MEIS3	Q99687	375 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	SEZ6L	Q9BYH1	1024 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	KRTAP1-5	Q9BYS1	174 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	NPFFR1	Q9GZQ6	430 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	MVB12B	Q9H7P6	319 aa		4.93	□□□□□ -1.62
CD44-223	ENST00000526553	EBAG9	O00559	213 aa		4.92	□□□□□ -1.62

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