RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 LMAN2LQ9H0V9 348 aa4.24□□□□□ -1.73
CD44-217ENST00000525348 MVB12BQ9H7P6 319 aa4.24□□□□□ -1.73
CD44-217ENST00000525348 RASSF1Q9NS23 344 aa4.24□□□□□ -1.73
CD44-217ENST00000525348 FBXO40Q9UH90 709 aa4.24□□□□□ -1.73
CD44-217ENST00000525348 DOCK7Q96N67 2140 aa4.24□□□□□ -1.73
CD44-217ENST00000525348 PIP5K1CO60331 668 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 HBP1O60381 514 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 GLUD1P00367 558 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 SERPINC1P01008 464 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 MMP3P08254 477 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 CNPP09543 421 aaKnown RBP4.23□□□□□ -1.73
CD44-217ENST00000525348 FGF3P11487 239 aaPredicted RBP4.23□□□□□ -1.73
CD44-217ENST00000525348 NAGAP17050 411 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 YWHAQP27348 245 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 AMTP48728 403 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 GLUD2P49448 558 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 CTTNQ14247 550 aaKnown RBP4.23□□□□□ -1.73
CD44-217ENST00000525348 GRAMD1BQ3KR37 738 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 ADCK5Q3MIX3 580 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 GLIPR1L2Q4G1C9 344 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 NADSYN1Q6IA69 706 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 C18orf65Q6ZTR6 163 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 MON1BQ7L1V2 547 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 C2CD5Q86YS7 1000 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 DCP1BQ8IZD4 617 aaKnown RBP4.23□□□□□ -1.73
CD44-217ENST00000525348 LMO3Q8TAP4 145 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 CCT6BQ92526 530 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 FAM84BQ96KN1 310 aaPredicted RBP4.23□□□□□ -1.73
CD44-217ENST00000525348 GFM1Q96RP9 751 aaKnown RBP4.23□□□□□ -1.73
CD44-217ENST00000525348 NPLQ9BXD5 320 aaPredicted RBP4.23□□□□□ -1.73
CD44-217ENST00000525348 TTC12Q9H892 705 aaPredicted RBP4.23□□□□□ -1.73
CD44-217ENST00000525348 CLK4Q9HAZ1 481 aaKnown RBP4.23□□□□□ -1.73
CD44-217ENST00000525348 RRP7AQ9Y3A4 280 aaKnown RBP4.23□□□□□ -1.73
CD44-217ENST00000525348 SRPRBQ9Y5M8 271 aaKnown RBP4.23□□□□□ -1.73
CD44-217ENST00000525348 MORC2Q9Y6X9 1032 aaPredicted RBP4.23□□□□□ -1.73
CD44-217ENST00000525348 RB1CC1Q8TDY2 1594 aa4.23□□□□□ -1.73
CD44-217ENST00000525348 IGHV4-28A0A0C4DH34 117 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 VWA3AA6NCI4 1184 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 FAM90A7PA6NKC0 464 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 FAM90A22PA8MWA6 464 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 FAM90A12PA8MX19 464 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 FAM90A23PA8MXZ1 464 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 PRSS44E7EML9 344 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 EYA2O00167 538 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 SLC25A17O43808 307 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 CKMT1AP12532 417 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 TNNT1P13805 278 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 CTPS1P17812 591 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 NFATC4Q14934 902 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 SLC18A3Q16572 532 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 PRSS57Q6UWY2 283 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.22□□□□□ -1.73
CD44-217ENST00000525348 PALB2Q86YC2 1186 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 TMC8Q8IU68 726 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 ANKRD44Q8N8A2 993 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 SMRP1Q8NCR6 262 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 RASSF8Q8NHQ8 419 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 TMED6Q8WW62 240 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 TWNKQ96RR1 684 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 CHMP4BQ9H444 224 aaKnown RBP4.22□□□□□ -1.73
CD44-217ENST00000525348 STN1Q9H668 368 aaKnown RBP4.22□□□□□ -1.73
CD44-217ENST00000525348 IL36RNQ9UBH0 155 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 GPR52Q9Y2T5 361 aa4.22□□□□□ -1.73
CD44-217ENST00000525348 SRRM3A6NNA2 597 aaPredicted RBP4.21□□□□□ -1.74
CD44-217ENST00000525348 KLK10O43240 276 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 ITM2AO43736 263 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 IL1AP01583 271 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 TGFB3P10600 412 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 TTKP33981 857 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 ARSFP54793 590 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 ARL4CP56559 192 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 DSC1Q08554 894 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 KIF5AQ12840 1032 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 GRSF1Q12849 480 aaKnown RBP eCLIP4.21□□□□□ -1.74
CD44-217ENST00000525348 CAPRIN2Q6IMN6 1127 aaKnown RBP4.21□□□□□ -1.74
CD44-217ENST00000525348 LDHAL6AQ6ZMR3 332 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 FAM43BQ6ZT52 329 aaPredicted RBP4.21□□□□□ -1.74
CD44-217ENST00000525348 ARMC9Q7Z3E5 817 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 FJX1Q86VR8 437 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 MON1AQ86VX9 555 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 GHDCQ8N2G8 530 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 MCPH1Q8NEM0 835 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 OR14A16Q8NHC5 309 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 PSMD1Q99460 953 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.21□□□□□ -1.74
CD44-217ENST00000525348 IL25Q9H293 177 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 GDAQ9Y2T3 454 aa4.21□□□□□ -1.74
CD44-217ENST00000525348 A0A096LPK6 155 aa4.2□□□□□ -1.74
CD44-217ENST00000525348 KDM4EB2RXH2 506 aaPredicted RBP4.2□□□□□ -1.74
CD44-217ENST00000525348 J3KR12 359 aa4.2□□□□□ -1.74
CD44-217ENST00000525348 PEX12O00623 359 aa4.2□□□□□ -1.74
CD44-217ENST00000525348 TIMM23O14925 209 aa4.2□□□□□ -1.74
CD44-217ENST00000525348 ASAP2O43150 1006 aa4.2□□□□□ -1.74
CD44-217ENST00000525348 IRAK2O43187 625 aa4.2□□□□□ -1.74
CD44-217ENST00000525348 PRSS2P07478 247 aa4.2□□□□□ -1.74
CD44-217ENST00000525348 FCGR1AP12314 374 aa4.2□□□□□ -1.74
CD44-217ENST00000525348 HALP42357 657 aa4.2□□□□□ -1.74
CD44-217ENST00000525348 GPR12P47775 334 aa4.2□□□□□ -1.74
CD44-217ENST00000525348 KCNJ4P48050 445 aa4.2□□□□□ -1.74
CD44-217ENST00000525348 CENPAP49450 140 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms