RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 TCEA2Q15560 299 aa20.7■□□□□ 0.9
SQSTM1-215ENST00000514093 EFHC1Q5JVL4 640 aa20.7■□□□□ 0.9
SQSTM1-215ENST00000514093 PHACTR4Q8IZ21 702 aa20.7■□□□□ 0.9
SQSTM1-215ENST00000514093 DCAF4L2Q8NA75 395 aa20.7■□□□□ 0.9
SQSTM1-215ENST00000514093 LIN37Q96GY3 246 aaPredicted RBP20.7■□□□□ 0.9
SQSTM1-215ENST00000514093 CPXM1Q96SM3 734 aa20.7■□□□□ 0.9
SQSTM1-215ENST00000514093 LRRC61Q9BV99 259 aa20.7■□□□□ 0.9
SQSTM1-215ENST00000514093 CLPBQ9H078 707 aa20.7■□□□□ 0.9
SQSTM1-215ENST00000514093 RABGEF1Q9UJ41 708 aa20.7■□□□□ 0.9
SQSTM1-215ENST00000514093 ITM2BQ9Y287 266 aa20.7■□□□□ 0.9
SQSTM1-215ENST00000514093 ACTL7AQ9Y615 435 aa20.7■□□□□ 0.9
SQSTM1-215ENST00000514093 A0A1W2PQ27 194 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 A0A1W2PQ64 194 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 I6L893 689 aaPredicted RBP20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 M0QYT0 321 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 RIOK3O14730 519 aaKnown RBP20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 HSF2BPO75031 334 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 GLI1P08151 1106 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 TSHRP16473 764 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 GKP32189 559 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 THOP1P52888 689 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 COBLL1Q53SF7 1204 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 FAM183BPQ6ZVS7 135 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 PASD1Q8IV76 773 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 WDR48Q8TAF3 677 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 HEPHQ9BQS7 1158 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 TKTL2Q9H0I9 626 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 UBE2TQ9NPD8 197 aaPredicted RBP20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 TMPRSS4Q9NRS4 437 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 PIGVQ9NUD9 493 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 SIRPGQ9P1W8 387 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 PCDHGA7Q9Y5G6 932 aa20.69■□□□□ 0.9
SQSTM1-215ENST00000514093 LMO7DNF2Z398 122 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 NEMP1O14524 444 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 P4HA2O15460 535 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 AP1G1O43747 822 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 ITGB2P05107 769 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 ABL2P42684 1182 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 CCNHP51946 323 aaPredicted RBP20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 CYP4F2P78329 520 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 CCL7P80098 99 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 MEA1Q16626 185 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 CARD16Q5EG05 197 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 FAXCQ5TGI0 409 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 OTUD1Q5VV17 481 aaPredicted RBP20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 ISM2Q6H9L7 571 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 ESRP1Q6NXG1 681 aaKnown RBP20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 ZNF574Q6ZN55 896 aaPredicted RBP20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 SETD3Q86TU7 594 aaPredicted RBP20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 VASH2Q86V25 355 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 HSCBQ8IWL3 235 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 ZNF683Q8IZ20 524 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 OR6K2Q8NGY2 324 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 SLC13A1Q9BZW2 595 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 INTS2Q9H0H0 1204 aaKnown RBP20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 ZDHHC6Q9H6R6 413 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 ASNSD1Q9NWL6 643 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 PISDQ9UG56 409 aa20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 FCF1Q9Y324 198 aaKnown RBP20.68■□□□□ 0.9
SQSTM1-215ENST00000514093 TFE3P19532 575 aaPredicted RBP20.67■□□□□ 0.9
SQSTM1-215ENST00000514093 PTK2BQ14289 1009 aa20.67■□□□□ 0.9
SQSTM1-215ENST00000514093 XKR5Q6UX68 686 aa20.67■□□□□ 0.9
SQSTM1-215ENST00000514093 SDR16C5Q8N3Y7 309 aa20.67■□□□□ 0.9
SQSTM1-215ENST00000514093 CCDC74AQ96AQ1 378 aa20.67■□□□□ 0.9
SQSTM1-215ENST00000514093 GFM1Q96RP9 751 aaKnown RBP20.67■□□□□ 0.9
SQSTM1-215ENST00000514093 WDCPQ9H6R7 721 aa20.67■□□□□ 0.9
SQSTM1-215ENST00000514093 ZDHHC9Q9Y397 364 aa20.67■□□□□ 0.9
SQSTM1-215ENST00000514093 A0A1W2PQM1 296 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 DRGXA6NNA5 263 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 C16orf96A6NNT2 1141 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 TSPAN6O43657 245 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 RPLP0P05388 317 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 OR1E1P30953 314 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 USP8P40818 1118 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 SERPINH1P50454 418 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 INHBCP55103 352 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 MTA1Q13330 715 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 TBR1Q16650 682 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 GJB7Q6PEY0 223 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 VPS36Q86VN1 386 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 RYBPQ8N488 228 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 KYQ8NBH2 561 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 CENPTQ96BT3 561 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 CCDC34Q96HJ3 373 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 CEP63Q96MT8 703 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 GSDMAQ96QA5 445 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 TM6SF2Q9BZW4 377 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 GDPD2Q9HCC8 539 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 ARHGEF38Q9NXL2 777 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 HECAQ9UBI9 543 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 DOPEY2Q9Y3R5 2298 aa20.66■□□□□ 0.9
SQSTM1-215ENST00000514093 D6RAR5 112 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 SRGAP2O75044 1071 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 DAB1O75553 588 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 ZMPSTE24O75844 475 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 ERBB2P04626 1255 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 JMJD7P0C870 316 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 LIPCP11150 499 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 CD44P16070 742 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 WT1P19544 449 aaPredicted RBP20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms