RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 GHRHRQ02643 423 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 NTRK3Q16288 839 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 UAP1L1Q3KQV9 507 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 CERCAMQ5T4B2 595 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 EEF1DP3Q658K8 133 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ZNF470Q6ECI4 717 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 MFSD7Q6UXD7 560 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 CERS6Q6ZMG9 384 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SCLYQ96I15 445 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SPATA13Q96N96 652 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SH3GL3Q99963 347 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ZNF670Q9BS34 389 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 LRRC1Q9BTT6 524 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 LHX5Q9H2C1 402 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 DPEP2Q9H4A9 486 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 C8orf33Q9H7E9 229 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 GALNT8Q9NY28 637 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 GMIPQ9P107 970 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 MTRRQ9UBK8 725 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ADAM30Q9UKF2 790 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 CPQQ9Y646 472 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 MROH1Q8NDA8 1641 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 INPPL1O15357 1258 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 CNOT3O75175 753 aaKnown RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 WDR47O94967 919 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 TAL1P17542 331 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 FAM187BQ17R55 369 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 TRIM60Q495X7 471 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 TTC23Q5W5X9 447 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 CAPN13Q6MZZ7 669 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 CLEC17AQ6ZS10 378 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 PLD3Q8IV08 490 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ARHGEF19Q8IW93 802 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 C7orf57Q8NEG2 295 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SELENOMQ8WWX9 145 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ING5Q8WYH8 240 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 LMAN2LQ9H0V9 348 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 VPS45Q9NRW7 570 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 IMP3Q9NV31 184 aaKnown RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 RCOR3Q9P2K3 495 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 ASTN2O75129 1339 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 A0A087X0T9 212 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SOWAHBA6NEL2 793 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 TM7SF2O76062 418 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 PDE9AO76083 593 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 FAM228BP0C875 321 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 TSHRP16473 764 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 NFKB1P19838 968 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 WARSP23381 471 aaKnown RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 MGAT1P26572 445 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 S100A5P33763 92 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 HSPA13P48723 471 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 RAD23AP54725 363 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 GJA9P57773 515 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SPIRE1Q08AE8 756 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 HSDL1Q3SXM5 330 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 FAM183BPQ6ZVS7 135 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 GKN2Q86XP6 184 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 PEX5LQ8IYB4 626 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SAMD14Q8IZD0 417 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 CLP1Q92989 425 aaKnown RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 SLC22A18Q96BI1 424 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 RMND5BQ96G75 393 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 FCRL2Q96LA5 508 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 CDCA3Q99618 268 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 FAM118BQ9BPY3 351 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 AGXT2Q9BYV1 514 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 BTBD1Q9H0C5 482 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 VIPAS39Q9H9C1 493 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ETNK1Q9HBU6 452 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 VAV3Q9UKW4 847 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 TCP11X1B4DZS4 312 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 SKAP2O75563 359 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 CDK14O94921 469 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 HNRNPA1P09651 372 aaKnown RBP eCLIP4.28□□□□□ -1.72
VCAN-209ENST00000513016 VAV1P15498 845 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 TPH1P17752 444 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 CXCR3P49682 368 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 SEC13P55735 322 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 SF1Q15637 639 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 NLRP14Q86W24 1093 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 PARGQ86W56 976 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ACTRT1Q8TDG2 376 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 MS4A14Q96JA4 679 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 ZNF514Q96K75 400 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 NUSAP1Q9BXS6 441 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 CDH19Q9H159 772 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 SFXN1Q9H9B4 322 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 EXOSC4Q9NPD3 245 aaKnown RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 EXD2Q9NVH0 621 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 LZTS1Q9Y250 596 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 COQ6Q9Y2Z9 468 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 AK9Q5TCS8 1911 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 DNALI1O14645 258 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 TSPAN1O60635 241 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 C1RP00736 705 aa4.28□□□□□ -1.72
VCAN-209ENST00000513016 KLK3P07288 261 aaPredicted RBP4.28□□□□□ -1.72
VCAN-209ENST00000513016 PAICSP22234 425 aaKnown RBP4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms