RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 GGT7Q9UJ14 662 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 NEU3Q9UQ49 428 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 ITM2BQ9Y287 266 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 ASXL3Q9C0F0 2248 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 IGLON5A6NGN9 336 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 H3BM21 787 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 TK2O00142 265 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 PES1O00541 588 aaKnown RBP12.61□□□□□ -0.39
CPSF3-204ENST00000489403 NME1P15531 152 aaKnown RBP12.61□□□□□ -0.39
CPSF3-204ENST00000489403 RABIFP47224 123 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 DUSP3P51452 185 aaPredicted RBP12.61□□□□□ -0.39
CPSF3-204ENST00000489403 GABREP78334 506 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 NRG1Q02297 640 aaPredicted RBP12.61□□□□□ -0.39
CPSF3-204ENST00000489403 PDE1CQ14123 709 aaPredicted RBP12.61□□□□□ -0.39
CPSF3-204ENST00000489403 CDO1Q16878 200 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 ZCCHC8Q6NZY4 707 aaKnown RBP12.61□□□□□ -0.39
CPSF3-204ENST00000489403 GPR155Q7Z3F1 870 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 ZSCAN30Q86W11 494 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 NLRP14Q86W24 1093 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 PLPP6Q8IY26 295 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 SLC20A1Q8WUM9 679 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 ARHGEF2Q92974 986 aaKnown RBP12.61□□□□□ -0.39
CPSF3-204ENST00000489403 VOPP1Q96AW1 172 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 ISG20Q96AZ6 181 aaKnown RBP12.61□□□□□ -0.39
CPSF3-204ENST00000489403 NAF1Q96HR8 494 aaKnown RBP12.61□□□□□ -0.39
CPSF3-204ENST00000489403 ZNF578Q96N58 590 aaPredicted RBP12.61□□□□□ -0.39
CPSF3-204ENST00000489403 LGMNQ99538 433 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 C1QTNF2Q9BXJ5 285 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 CLSTN2Q9H4D0 955 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 USP29Q9HBJ7 922 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 SAMSN1Q9NSI8 373 aaKnown RBP12.61□□□□□ -0.39
CPSF3-204ENST00000489403 HECAQ9UBI9 543 aaPredicted RBP12.61□□□□□ -0.39
CPSF3-204ENST00000489403 OR12D3Q9UGF7 316 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 DNAI1Q9UI46 699 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 KLF15Q9UIH9 416 aa12.61□□□□□ -0.39
CPSF3-204ENST00000489403 PTPRQQ9UMZ3 2332 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 CXorf51AA0A1B0GTR3 108 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 TEX51A0A1B0GUA7 166 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 C16orf96A6NNT2 1141 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 FAM72CH0Y354 149 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 FPGTO14772 594 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 SPINT1O43278 529 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 AQP9O43315 295 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 TSPAN6O43657 245 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 LZTS3O60299 673 aaPredicted RBP12.6□□□□□ -0.39
CPSF3-204ENST00000489403 USP12O75317 370 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 CSO75390 466 aaKnown RBP12.6□□□□□ -0.39
CPSF3-204ENST00000489403 DXOO77932 396 aaKnown RBP12.6□□□□□ -0.39
CPSF3-204ENST00000489403 CYP1A1P04798 512 aaPredicted RBP12.6□□□□□ -0.39
CPSF3-204ENST00000489403 ERCC5P28715 1186 aaPredicted RBP12.6□□□□□ -0.39
CPSF3-204ENST00000489403 ETFBP38117 255 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 MAPKAPK2P49137 400 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 PCBP4P57723 403 aaKnown RBP12.6□□□□□ -0.39
CPSF3-204ENST00000489403 PFN3P60673 137 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 CXADRP78310 365 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 C19orf57Q0VDD7 668 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 CCDC14Q49A88 953 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 ZNF805Q5CZA5 627 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 FAM72AQ5TYM5 149 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 FAM72DQ6L9T8 149 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 RWDD4Q6NW29 188 aaKnown RBP12.6□□□□□ -0.39
CPSF3-204ENST00000489403 GUSBP11Q6P575 273 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 FAM72BQ86X60 149 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 ZNF248Q8NDW4 579 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 OR2AP1Q8NGE2 309 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 JOSD2Q8TAC2 188 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 MAPK15Q8TD08 544 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 RXFP2Q8WXD0 754 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 RAB7BQ96AH8 199 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 HIC2Q96JB3 615 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 STK33Q9BYT3 514 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 MAGEB5Q9BZ81 275 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 OSBPL2Q9H1P3 480 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 GANQ9H2C0 597 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 EVA1BQ9NVM1 165 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 TMEM248Q9NWD8 314 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 NOCTQ9UK39 431 aaKnown RBP12.6□□□□□ -0.39
CPSF3-204ENST00000489403 CSNK1G3Q9Y6M4 447 aa12.6□□□□□ -0.39
CPSF3-204ENST00000489403 EME2A4GXA9 379 aaPredicted RBP12.59□□□□□ -0.39
CPSF3-204ENST00000489403 C2CD4BA6NLJ0 364 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 GFPT2O94808 682 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 LRIG2O94898 1065 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 GJB6O95452 261 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 GSRP00390 522 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 RHOQP17081 205 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 JUNDP17535 347 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 TGM2P21980 687 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 MMP8P22894 467 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 ADRA1BP35368 520 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 IGFALSP35858 605 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 FMO1Q01740 532 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 EIF2B5Q13144 721 aaKnown RBP12.59□□□□□ -0.39
CPSF3-204ENST00000489403 SGCGQ13326 291 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 POLD3Q15054 466 aaPredicted RBP12.59□□□□□ -0.39
CPSF3-204ENST00000489403 CDKN3Q16667 212 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 DEFB133Q30KQ1 61 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 ARL13BQ3SXY8 428 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 PCSK4Q6UW60 755 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 LEKR1Q6ZMV7 388 aa12.59□□□□□ -0.39
CPSF3-204ENST00000489403 PHLDB2Q86SQ0 1253 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms