RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ADAMTS9Q9P2N4 1935 aa15□□□□□ -0.01
USP4-212ENST00000486549 TBC1D3DA0A087WVF3 549 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 TBC1D3IA0A087WXS9 549 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 TBC1D3EA0A087X179 549 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 TBC1D3KA0A087X1G2 549 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 TBC1D3FA6NER0 549 aaPredicted RBP14.99□□□□□ -0.01
USP4-212ENST00000486549 GOLGA6L3A6NEY3 463 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 TBC1D3LB9A6J9 549 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 PALMO75781 387 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 MAP3K6O95382 1288 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 TBC1D3HP0C7X1 549 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 KDELR1P24390 212 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 IL10RBQ08334 325 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 TRIM61Q5EBN2 209 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 AGBL4Q5VU57 503 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 KIAA0895LQ68EN5 471 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 NCBP2-AS2Q69YL0 99 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 TBC1D3GQ6DHY5 549 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 TBC1D3CQ6IPX1 549 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 DAAM2Q86T65 1068 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 TBC1D3Q8IZP1 549 aaPredicted RBP14.99□□□□□ -0.01
USP4-212ENST00000486549 ZCCHC9Q8N567 271 aaKnown RBP14.99□□□□□ -0.01
USP4-212ENST00000486549 OR2T34Q8NGX1 318 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 PPP1R16AQ96I34 528 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 CINPQ9BW66 212 aaPredicted RBP14.99□□□□□ -0.01
USP4-212ENST00000486549 LACRTQ9GZZ8 138 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 GRPEL1Q9HAV7 217 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 LHX3Q9UBR4 397 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 EVLQ9UI08 416 aaPredicted RBP14.99□□□□□ -0.01
USP4-212ENST00000486549 EIF2B4Q9UI10 523 aaKnown RBP14.99□□□□□ -0.01
USP4-212ENST00000486549 SALL4Q9UJQ4 1053 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 ALG6Q9Y672 507 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 DUSP10Q9Y6W6 482 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 DCHS1Q96JQ0 3298 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 PLXNA2O75051 1894 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 CACNA1AO00555 2505 aa14.99□□□□□ -0.01
USP4-212ENST00000486549 ANKRD36A6QL64 1941 aa14.98□□□□□ -0.01
USP4-212ENST00000486549 UGT2B4P06133 528 aa14.98□□□□□ -0.01
USP4-212ENST00000486549 MYLK3Q32MK0 819 aa14.98□□□□□ -0.01
USP4-212ENST00000486549 PIP5KL1Q5T9C9 394 aa14.98□□□□□ -0.01
USP4-212ENST00000486549 LRRC38Q5VT99 294 aa14.98□□□□□ -0.01
USP4-212ENST00000486549 C11orf63Q6NUN7 778 aa14.98□□□□□ -0.01
USP4-212ENST00000486549 TPCN2Q8NHX9 752 aa14.98□□□□□ -0.01
USP4-212ENST00000486549 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.98□□□□□ -0.01
USP4-212ENST00000486549 RNF25Q96BH1 459 aaPredicted RBP14.98□□□□□ -0.01
USP4-212ENST00000486549 BIRC7Q96CA5 298 aa14.98□□□□□ -0.01
USP4-212ENST00000486549 PCED1AQ9H1Q7 454 aa14.98□□□□□ -0.01
USP4-212ENST00000486549 FSCN3Q9NQT6 498 aa14.98□□□□□ -0.01
USP4-212ENST00000486549 RXFP3Q9NSD7 469 aa14.98□□□□□ -0.01
USP4-212ENST00000486549 DDX56Q9NY93 547 aaKnown RBP14.98□□□□□ -0.01
USP4-212ENST00000486549 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.98□□□□□ -0.01
USP4-212ENST00000486549 A0A0U1RQJ8 604 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 DCDC2BA2VCK2 349 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 INSIG1O15503 277 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 SLC7A4O43246 635 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 PSTPIP1O43586 416 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 PLRG1O43660 514 aaKnown RBP14.97□□□□□ -0.01
USP4-212ENST00000486549 GDF9O60383 454 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 POP4O95707 220 aaKnown RBP14.97□□□□□ -0.01
USP4-212ENST00000486549 IGHV4-34P06331 123 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 GNSP15586 552 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 ITGB7P26010 798 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 PPP2CBP62714 309 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 PPP2CAP67775 309 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 RAD51Q06609 339 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 PAFAH1B3Q15102 231 aaKnown RBP14.97□□□□□ -0.01
USP4-212ENST00000486549 DUOXA1Q1HG43 343 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 TMCO4Q5TGY1 634 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 STPG1Q5TH74 334 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 PEAR1Q5VY43 1037 aaPredicted RBP14.97□□□□□ -0.01
USP4-212ENST00000486549 ERN2Q76MJ5 926 aaKnown RBP14.97□□□□□ -0.01
USP4-212ENST00000486549 PARS2Q7L3T8 475 aaKnown RBP14.97□□□□□ -0.01
USP4-212ENST00000486549 PLPP6Q8IY26 295 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 PQLC3Q8N755 202 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 CEP76Q8TAP6 659 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 FAF2Q96CS3 445 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 KLHL32Q96NJ5 620 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 RNF157Q96PX1 679 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 EDEM2Q9BV94 578 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 NUSAP1Q9BXS6 441 aaKnown RBP14.97□□□□□ -0.01
USP4-212ENST00000486549 TRIM10Q9UDY6 481 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 SUSD2Q9UGT4 822 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 SLCO1B1Q9Y6L6 691 aa14.97□□□□□ -0.01
USP4-212ENST00000486549 LNP1A1A4G5 178 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 MACROD2A1Z1Q3 448 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 C3orf70A6NLC5 250 aaPredicted RBP14.96□□□□□ -0.01
USP4-212ENST00000486549 PJA2O43164 708 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 PIGNO95427 931 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 MAT2AP31153 395 aaKnown RBP14.96□□□□□ -0.01
USP4-212ENST00000486549 RGRP47804 291 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 MARCKSL1P49006 195 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 NEK3P51956 506 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 TAS2R38P59533 333 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 DYNLT1P63172 113 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 IRX4P78413 519 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 GBE1Q04446 702 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 SLC10A7Q0GE19 358 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 CCDC15Q0P6D6 951 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 KIF5AQ12840 1032 aa14.96□□□□□ -0.01
USP4-212ENST00000486549 ZNF235Q14590 738 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms