RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 PROX2Q3B8N5 592 aa21.93■■□□□ 1.1
USP40-215ENST00000484528 ZNF542PQ5EBM4 170 aa21.93■■□□□ 1.1
USP40-215ENST00000484528 ATXN7L2Q5T6C5 722 aaPredicted RBP21.93■■□□□ 1.1
USP40-215ENST00000484528 DNAJC24Q6P3W2 148 aa21.93■■□□□ 1.1
USP40-215ENST00000484528 SCYL2Q6P3W7 929 aa21.93■■□□□ 1.1
USP40-215ENST00000484528 HNRNPLLQ8WVV9 542 aaKnown RBP21.93■■□□□ 1.1
USP40-215ENST00000484528 NTAN1Q96AB6 310 aa21.93■■□□□ 1.1
USP40-215ENST00000484528 SLC17A9Q9BYT1 436 aa21.93■■□□□ 1.1
USP40-215ENST00000484528 MAGEH1Q9H213 219 aa21.93■■□□□ 1.1
USP40-215ENST00000484528 KLHL11Q9NVR0 708 aa21.93■■□□□ 1.1
USP40-215ENST00000484528 DKK4Q9UBT3 224 aa21.93■■□□□ 1.1
USP40-215ENST00000484528 GGT7Q9UJ14 662 aa21.93■■□□□ 1.1
USP40-215ENST00000484528 IGSF10Q6WRI0 2623 aa21.93■■□□□ 1.1
USP40-215ENST00000484528 POM121BA6NF01 834 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 PAK4O96013 591 aaPredicted RBP21.92■■□□□ 1.1
USP40-215ENST00000484528 CKMT2P17540 419 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 DGKAP23743 735 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 RPS21P63220 83 aaKnown RBP21.92■■□□□ 1.1
USP40-215ENST00000484528 TARDBPQ13148 414 aaKnown RBP eCLIP21.92■■□□□ 1.1
USP40-215ENST00000484528 NCAPHQ15003 741 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 POLD3Q15054 466 aaPredicted RBP21.92■■□□□ 1.1
USP40-215ENST00000484528 KIAA1161Q6NSJ0 714 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 KDM7AQ6ZMT4 941 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 Q6ZSR6 202 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 APTXQ7Z2E3 356 aaKnown RBP21.92■■□□□ 1.1
USP40-215ENST00000484528 ABI3BPQ7Z7G0 1075 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 SLFN11Q7Z7L1 901 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 AOPEPQ8N6M6 819 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 MCEEQ96PE7 176 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 ERGIC2Q96RQ1 377 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 AGPAT1Q99943 283 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 HSD3B7Q9H2F3 369 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 HPCAL4Q9UM19 191 aa21.92■■□□□ 1.1
USP40-215ENST00000484528 LRRK1Q38SD2 2015 aa21.91■■□□□ 1.1
USP40-215ENST00000484528 C16orf96A6NNT2 1141 aa21.91■■□□□ 1.1
USP40-215ENST00000484528 A6NNZ2 444 aa21.91■■□□□ 1.1
USP40-215ENST00000484528 UGT2B4P06133 528 aa21.91■■□□□ 1.1
USP40-215ENST00000484528 ATP1A3P13637 1013 aa21.91■■□□□ 1.1
USP40-215ENST00000484528 GEMIN4P57678 1058 aaKnown RBP21.91■■□□□ 1.1
USP40-215ENST00000484528 RPL7AP62424 266 aaKnown RBP21.91■■□□□ 1.1
USP40-215ENST00000484528 DAB2P98082 770 aa21.91■■□□□ 1.1
USP40-215ENST00000484528 EFHC2Q5JST6 749 aa21.91■■□□□ 1.1
USP40-215ENST00000484528 LRRC73Q5JTD7 316 aa21.91■■□□□ 1.1
USP40-215ENST00000484528 OR2AP1Q8NGE2 309 aa21.91■■□□□ 1.1
USP40-215ENST00000484528 ISG20Q96AZ6 181 aaKnown RBP21.91■■□□□ 1.1
USP40-215ENST00000484528 FEM1CQ96JP0 617 aa21.91■■□□□ 1.1
USP40-215ENST00000484528 BMFQ96LC9 184 aa21.91■■□□□ 1.1
USP40-215ENST00000484528 NOL6Q9H6R4 1146 aaKnown RBP21.91■■□□□ 1.1
USP40-215ENST00000484528 DNAJC28Q9NX36 388 aa21.91■■□□□ 1.1
USP40-215ENST00000484528 TCRBV5S1A1TA0A578 114 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 IGLON5A6NGN9 336 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 SIGLEC16A6NMB1 481 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 NEMP1O14524 444 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 BUB1O43683 1085 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 CREB3O43889 395 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 PIAS2O75928 621 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 TMCC1O94876 653 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 GSRP00390 522 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 CDK4P11802 303 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 EPHB2P29323 1055 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 SNRPD1P62314 119 aaKnown RBP21.9■■□□□ 1.1
USP40-215ENST00000484528 C1QBPQ07021 282 aaKnown RBP21.9■■□□□ 1.1
USP40-215ENST00000484528 TMC6Q7Z403 805 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 RTL3Q8N8U3 475 aaKnown RBP21.9■■□□□ 1.1
USP40-215ENST00000484528 OR4C6Q8NH72 309 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 VOPP1Q96AW1 172 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 KLHL32Q96NJ5 620 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 KLC2Q9H0B6 622 aa21.9■■□□□ 1.1
USP40-215ENST00000484528 ANKRD36A6QL64 1941 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 ANKRD62A6NC57 917 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 GOLGA6L22H0YM25 854 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 SPINT1O43278 529 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 KDELR3O43731 214 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 AP1G1O43747 822 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 MYF5P13349 255 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 ZNF143P52747 638 aaPredicted RBP21.89■■□□□ 1.09
USP40-215ENST00000484528 ZNF211Q13398 564 aaPredicted RBP21.89■■□□□ 1.09
USP40-215ENST00000484528 HS1BP3Q53T59 392 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 ZNF805Q5CZA5 627 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 KYAT3Q6YP21 454 aaKnown RBP21.89■■□□□ 1.09
USP40-215ENST00000484528 NXPE2Q96DL1 559 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 DCBLD2Q96PD2 775 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 RETREG1Q9H6L5 497 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 ASXL3Q9C0F0 2248 aa21.89■■□□□ 1.09
USP40-215ENST00000484528 NEBLO76041 1014 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 GIMD1P0DJR0 217 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 ACP1P24666 158 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 OGDHQ02218 1023 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 SGCGQ13326 291 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 ILKQ13418 452 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 FZD2Q14332 565 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 MYLK3Q32MK0 819 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 TPRG1LQ5T0D9 272 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 CCDC183Q5T5S1 534 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 PDZD3Q86UT5 571 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 PLPP6Q8IY26 295 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 BAP1Q92560 729 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 HMCESQ96FZ2 354 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 GPATCH2LQ9NWQ4 482 aa21.88■■□□□ 1.09
USP40-215ENST00000484528 TAS2R14Q9NYV8 317 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms