RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 A0A1W2PPC4 97 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 DFFAO00273 331 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 CDX4O14627 284 aaPredicted RBP18.28■□□□□ 0.52
HDAC6-225ENST00000483506 FSBPO95073 299 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 IGSF6O95976 241 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 CFIP05156 583 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 ENGP17813 658 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 MMRN1Q13201 1228 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 PUM1Q14671 1186 aaKnown RBP eCLIP18.28■□□□□ 0.52
HDAC6-225ENST00000483506 POM121L1PQ3SYA9 428 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 STPG1Q5TH74 334 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 NEK5Q6P3R8 708 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 ERN2Q76MJ5 926 aaKnown RBP18.28■□□□□ 0.52
HDAC6-225ENST00000483506 TMEM139Q8IV31 216 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 MAP7D3Q8IWC1 876 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 TP53INP2Q8IXH6 220 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 ZNF599Q96NL3 588 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 RTKNQ9BST9 563 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 ZDHHC6Q9H6R6 413 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 DYRK4Q9NR20 520 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 IPO11Q9UI26 975 aaKnown RBP18.28■□□□□ 0.52
HDAC6-225ENST00000483506 SLCO1B1Q9Y6L6 691 aa18.28■□□□□ 0.52
HDAC6-225ENST00000483506 PLXNA2O75051 1894 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 FAM47DPA6NHR8 397 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 TMEM110-MUSTN1A8MSY1 372 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 ARHGAP33O14559 1287 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 NUDT1P36639 197 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 CSNK1DP48730 415 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 NEK3P51956 506 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 RHOAP61586 193 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 PAFAH1B3Q15102 231 aaKnown RBP18.27■□□□□ 0.52
HDAC6-225ENST00000483506 ANKRD20A8PQ5CZ79 823 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 ATXN7L2Q5T6C5 722 aaPredicted RBP18.27■□□□□ 0.52
HDAC6-225ENST00000483506 ARHGAP36Q6ZRI8 547 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 LRRC49Q8IUZ0 686 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 KCTD6Q8NC69 237 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 PCDH19Q8TAB3 1148 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 SNX19Q92543 992 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 CPEB1Q9BZB8 566 aaKnown RBP18.27■□□□□ 0.52
HDAC6-225ENST00000483506 ZDHHC5Q9C0B5 715 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 MIR1-1HGQ9H1L0 117 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 EBF2Q9HAK2 575 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 SP110Q9HB58 689 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 TMEM9BQ9NQ34 198 aa18.27■□□□□ 0.52
HDAC6-225ENST00000483506 ADAMTS9Q9P2N4 1935 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 TM4SF5O14894 197 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 AP1G1O43747 822 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 PEX11BO96011 259 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 SYPP08247 313 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 ADRB3P13945 408 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 GJC1P36383 396 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 GRIA4P48058 902 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 AFF3P51826 1226 aaKnown RBP18.26■□□□□ 0.51
HDAC6-225ENST00000483506 PPP2CBP62714 309 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 PPP2CAP67775 309 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 RAD51Q06609 339 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 GRM3Q14832 879 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 ZNF805Q5CZA5 627 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 TMCO4Q5TGY1 634 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 NCBP2-AS2Q69YL0 99 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 RAD9BQ6WBX8 426 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 PARS2Q7L3T8 475 aaKnown RBP18.26■□□□□ 0.51
HDAC6-225ENST00000483506 RYBPQ8N488 228 aaPredicted RBP18.26■□□□□ 0.51
HDAC6-225ENST00000483506 NETO2Q8NC67 525 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 OR6K2Q8NGY2 324 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 RAPGEF5Q92565 580 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 CALR3Q96L12 384 aaKnown RBP18.26■□□□□ 0.51
HDAC6-225ENST00000483506 BAG1Q99933 345 aaPredicted RBP18.26■□□□□ 0.51
HDAC6-225ENST00000483506 CALN1Q9BXU9 219 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 TM9SF3Q9HD45 589 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 KLHL11Q9NVR0 708 aa18.26■□□□□ 0.51
HDAC6-225ENST00000483506 REXO2Q9Y3B8 237 aaKnown RBP18.26■□□□□ 0.51
HDAC6-225ENST00000483506 TBC1D3DA0A087WVF3 549 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 TBC1D3IA0A087WXS9 549 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 TBC1D3EA0A087X179 549 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 TBC1D3KA0A087X1G2 549 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 TBC1D3FA6NER0 549 aaPredicted RBP18.25■□□□□ 0.51
HDAC6-225ENST00000483506 C3orf70A6NLC5 250 aaPredicted RBP18.25■□□□□ 0.51
HDAC6-225ENST00000483506 BTNL10A8MVZ5 291 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 TBC1D3LB9A6J9 549 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 KRIT1O00522 736 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 BUB1BO60566 1050 aaPredicted RBP18.25■□□□□ 0.51
HDAC6-225ENST00000483506 MAFKO60675 156 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 PALMO75781 387 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 TBC1D3HP0C7X1 549 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 KDELR1P24390 212 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 GKP32189 559 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 RACK1P63244 317 aaKnown RBP18.25■□□□□ 0.51
HDAC6-225ENST00000483506 BNC1Q01954 994 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 NSUN2Q08J23 767 aaKnown RBP eCLIP18.25■□□□□ 0.51
HDAC6-225ENST00000483506 GRIK2Q13002 908 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 TBC1D3GQ6DHY5 549 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 TBC1D3CQ6IPX1 549 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 C11orf63Q6NUN7 778 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 TBC1D3Q8IZP1 549 aaPredicted RBP18.25■□□□□ 0.51
HDAC6-225ENST00000483506 PQLC3Q8N755 202 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 HCAR2Q8TDS4 363 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 RAB7BQ96AH8 199 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 PSKH2Q96QS6 385 aa18.25■□□□□ 0.51
HDAC6-225ENST00000483506 DKK3Q9UBP4 350 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms