RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 BUB1O43683 1085 aa22.11■■□□□ 1.13
COL9A3-211ENST00000477612 AP1G1O43747 822 aa22.11■■□□□ 1.13
COL9A3-211ENST00000477612 PRPSAP2O60256 369 aa22.11■■□□□ 1.13
COL9A3-211ENST00000477612 MAT2AP31153 395 aaKnown RBP22.11■■□□□ 1.13
COL9A3-211ENST00000477612 NXPH1P58417 271 aa22.11■■□□□ 1.13
COL9A3-211ENST00000477612 MYLK3Q32MK0 819 aa22.11■■□□□ 1.13
COL9A3-211ENST00000477612 HORMAD1Q86X24 394 aa22.11■■□□□ 1.13
COL9A3-211ENST00000477612 TMEM145Q8NBT3 493 aa22.11■■□□□ 1.13
COL9A3-211ENST00000477612 KCTD15Q96SI1 283 aaPredicted RBP22.11■■□□□ 1.13
COL9A3-211ENST00000477612 PDFQ9HBH1 243 aa22.11■■□□□ 1.13
COL9A3-211ENST00000477612 NENFQ9UMX5 172 aa22.11■■□□□ 1.13
COL9A3-211ENST00000477612 MFHAS1Q9Y4C4 1052 aa22.11■■□□□ 1.13
COL9A3-211ENST00000477612 ANKRD36A6QL64 1941 aa22.11■■□□□ 1.13
COL9A3-211ENST00000477612 A0A1W2PQU0 124 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 MAGEC1O60732 1142 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 TMCC1O94876 653 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 TRIM16O95361 564 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 ADRB3P13945 408 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 PIGHQ14442 188 aaPredicted RBP22.1■■□□□ 1.13
COL9A3-211ENST00000477612 ZNF284Q2VY69 593 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 TMEM259Q4ZIN3 620 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 ZNF805Q5CZA5 627 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 AFMIDQ63HM1 303 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 ALKBH5Q6P6C2 394 aaKnown RBP22.1■■□□□ 1.13
COL9A3-211ENST00000477612 ZSCAN30Q86W11 494 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 NIPA2Q8N8Q9 360 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 RAB7BQ96AH8 199 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 OSBPL1AQ9BXW6 950 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 THAP2Q9H0W7 228 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 ZDHHC6Q9H6R6 413 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 GDF3Q9NR23 364 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 ZFR2Q9UPR6 939 aaKnown RBP22.1■■□□□ 1.13
COL9A3-211ENST00000477612 FADS3Q9Y5Q0 445 aa22.1■■□□□ 1.13
COL9A3-211ENST00000477612 ARID1BQ8NFD5 2236 aaPredicted RBP22.1■■□□□ 1.13
COL9A3-211ENST00000477612 PTPRBP23467 1997 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 CBFA2T2O43439 604 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 CYP1A2P05177 515 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 ERCC2P18074 760 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 RXRGP48443 463 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 FOXC1Q12948 553 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 STAT4Q14765 748 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 SHBQ15464 509 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 DPYSL2Q16555 572 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 BOLA3Q53S33 107 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 FBXL19Q6PCT2 694 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 LEKR1Q6ZMV7 388 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 RFX8Q6ZV50 586 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 PARS2Q7L3T8 475 aaKnown RBP22.09■■□□□ 1.13
COL9A3-211ENST00000477612 RHBDD1Q8TEB9 315 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 SETD7Q8WTS6 366 aaKnown RBP22.09■■□□□ 1.13
COL9A3-211ENST00000477612 SLC39A8Q9C0K1 460 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 CHD8Q9HCK8 2581 aa22.09■■□□□ 1.13
COL9A3-211ENST00000477612 SPEGQ15772 3267 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 YKT6O15498 198 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 IL1R2P27930 398 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 GKP32189 559 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 TRIM14Q14142 442 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 CYTH1Q15438 398 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 KIAA1161Q6NSJ0 714 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 SPATS2Q86XZ4 545 aaKnown RBP22.08■■□□□ 1.13
COL9A3-211ENST00000477612 ZNF354CQ86Y25 554 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 ARHGAP12Q8IWW6 846 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 OXR1Q8N573 874 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 GDAP1L1Q96MZ0 367 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 CDC6Q99741 560 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 CPEB1Q9BZB8 566 aaKnown RBP22.08■■□□□ 1.13
COL9A3-211ENST00000477612 TSPY26PQ9H489 355 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 CWC15Q9P013 229 aaKnown RBP22.08■■□□□ 1.13
COL9A3-211ENST00000477612 BTBD3Q9Y2F9 522 aa22.08■■□□□ 1.13
COL9A3-211ENST00000477612 TDRD6O60522 2096 aaKnown RBP22.07■■□□□ 1.12
COL9A3-211ENST00000477612 FAM221BA6H8Z2 402 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 C16orf96A6NNT2 1141 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 KRIT1O00522 736 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 PRAMEF11O60813 436 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 PCDH8O95206 1070 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 IGSF6O95976 241 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 TOP3BO95985 862 aaKnown RBP22.07■■□□□ 1.12
COL9A3-211ENST00000477612 HNRNPA2B1P22626 353 aaKnown RBP22.07■■□□□ 1.12
COL9A3-211ENST00000477612 GRK6P43250 576 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 RPS21P63220 83 aaKnown RBP22.07■■□□□ 1.12
COL9A3-211ENST00000477612 RAD51Q06609 339 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 CCDC122Q5T0U0 273 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 SPECC1LQ69YQ0 1117 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 RAB44Q7Z6P3 723 aaPredicted RBP22.07■■□□□ 1.12
COL9A3-211ENST00000477612 RYBPQ8N488 228 aaPredicted RBP22.07■■□□□ 1.12
COL9A3-211ENST00000477612 OR6K2Q8NGY2 324 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 FAM174AQ8TBP5 190 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 ADAMTS14Q8WXS8 1223 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 FEM1CQ96JP0 617 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 DNAJC7Q99615 494 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 LHX3Q9UBR4 397 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 UBA2Q9UBT2 640 aaPredicted RBP22.07■■□□□ 1.12
COL9A3-211ENST00000477612 IP6K2Q9UHH9 426 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 LRRK1Q38SD2 2015 aa22.07■■□□□ 1.12
COL9A3-211ENST00000477612 PLXNB3Q9ULL4 1909 aa22.06■■□□□ 1.12
COL9A3-211ENST00000477612 ARHGAP42A6NI28 874 aa22.06■■□□□ 1.12
COL9A3-211ENST00000477612 J3KR12 359 aa22.06■■□□□ 1.12
COL9A3-211ENST00000477612 SLC31A1O15431 190 aa22.06■■□□□ 1.12
COL9A3-211ENST00000477612 DAPK3O43293 454 aa22.06■■□□□ 1.12
COL9A3-211ENST00000477612 TSPAN6O43657 245 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms