RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	LRRK1	Q38SD2	2015 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373		A0A087X0T9	212 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	SPAAR	A0A1B0GVQ0	90 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	GOLGA8CP	A6NN73	597 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	TMEM110-MUSTN1	A8MSY1	372 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	MYO1F	O00160	1098 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	KCNK3	O14649	394 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	ZMPSTE24	O75844	475 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	UGT2B4	P06133	528 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	FAM228B	P0C875	321 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	AKT2	P31751	481 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	NUDT1	P36639	197 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	EIF4A3	P38919	411 aa	Known RBP	11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	PBX1	P40424	430 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	SEMA3B	Q13214	749 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	ACAP1	Q15027	740 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	CCDC157	Q569K6	752 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	ODF2	Q5BJF6	829 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	HGSNAT	Q68CP4	663 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	NAPEPLD	Q6IQ20	393 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	RFX8	Q6ZV50	586 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	OR2AP1	Q8NGE2	309 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	OR8K1	Q8NGG5	319 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	ZNF564	Q8TBZ8	553 aa	Predicted RBP	11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	CASKIN2	Q8WXE0	1202 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	ISG20	Q96AZ6	181 aa	Known RBP	11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	ARRDC3	Q96B67	414 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	BTBD6	Q96KE9	485 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	KCTD15	Q96SI1	283 aa	Predicted RBP	11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	IL21R	Q9HBE5	538 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	OSGEP	Q9NPF4	335 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	ZNF212	Q9UDV6	495 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	DMTF1	Q9Y222	760 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	FNDC3A	Q9Y2H6	1198 aa	Known RBP	11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373	SLCO1B1	Q9Y6L6	691 aa		11.72	□□□□□ -0.53
CPNE1-222	ENST00000473373		A0A1W2PQU0	124 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	PRAMEF26	H0Y7S4	382 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	VILL	O15195	856 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	FLRT2	O43155	660 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	DFNA5	O60443	496 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	LRCH4	O75427	683 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	PALM	O75781	387 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	NEBL	O76041	1014 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	POP4	O95707	220 aa	Known RBP	11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	GSR	P00390	522 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	ITGAV	P06756	1048 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	H2AFZ	P0C0S5	128 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	ADRB3	P13945	408 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	PRLR	P16471	622 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	ITGB7	P26010	798 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	GK	P32189	559 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	ARRB1	P49407	418 aa	Predicted RBP	11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	ZNF135	P52742	658 aa	Predicted RBP	11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	NDST2	P52849	883 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	SGCG	Q13326	291 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	TRIP6	Q15654	476 aa	Known RBP	11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	CA9	Q16790	459 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	HS1BP3	Q53T59	392 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	KCNT1	Q5JUK3	1230 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	PIP5KL1	Q5T9C9	394 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	H2AFV	Q71UI9	128 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	TRIM69	Q86WT6	500 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	KDF1	Q8NAX2	398 aa	Predicted RBP	11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	NETO2	Q8NC67	525 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	NSMCE1	Q8WV22	266 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	ARHGEF26	Q96DR7	871 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	FEM1C	Q96JP0	617 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	EXOC2	Q96KP1	924 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	KLHL32	Q96NJ5	620 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	CAMK1G	Q96NX5	476 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	PEBP4	Q96S96	227 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	CINP	Q9BW66	212 aa	Predicted RBP	11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	OSBPL1A	Q9BXW6	950 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	WASF3	Q9UPY6	502 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	WASF2	Q9Y6W5	498 aa		11.71	□□□□□ -0.53
CPNE1-222	ENST00000473373	C16orf96	A6NNT2	1141 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	WASH4P	A8MWX3	477 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373		H0Y8X5	98 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	CD59	P13987	128 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	ERCC2	P18074	760 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	SERPINB6	P35237	376 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	PCK1	P35558	622 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	PAPOLA	P51003	745 aa	Known RBP	11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	RPS21	P63220	83 aa	Known RBP	11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	SERINC3	Q13530	473 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	MYLK3	Q32MK0	819 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	BOLA3	Q53S33	107 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	ZNF805	Q5CZA5	627 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	NEK5	Q6P3R8	708 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	TMCO3	Q6UWJ1	677 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	GDPD4	Q6W3E5	623 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	PARS2	Q7L3T8	475 aa	Known RBP	11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	PTAR1	Q7Z6K3	402 aa	Predicted RBP	11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	TTC7B	Q86TV6	843 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	HORMAD1	Q86X24	394 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	PSTK	Q8IV42	348 aa	Known RBP	11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	CNGA4	Q8IV77	575 aa		11.7	□□□□□ -0.54
CPNE1-222	ENST00000473373	UMODL1-AS1	Q8N2C9	162 aa		11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms