RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	NPIPB15	A6NHN6	443 aa	Predicted RBP	4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044		A6NNC1	897 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	HSPB6	O14558	160 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	HEXA	P06865	529 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	GALT	P07902	379 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	FMO4	P31512	558 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	TNFSF8	P32971	234 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	RYK	P34925	604 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	PTGER1	P34995	402 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	CPOX	P36551	454 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	EIF3B	P55884	814 aa	Known RBP	4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	TAF11	Q15544	211 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	INPP5J	Q15735	1006 aa	Predicted RBP	4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	NEK10	Q6ZWH5	1172 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	MOB3C	Q70IA8	216 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	MCPH1	Q8NEM0	835 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	METTL6	Q8TCB7	284 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	GDPD5	Q8WTR4	605 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	KIF1BP	Q96EK5	621 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	ZNF419	Q96HQ0	510 aa	Predicted RBP	4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	KLHL15	Q96M94	604 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	B3GNT4	Q9C0J1	378 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	AAMDC	Q9H7C9	122 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	MAP6D1	Q9H9H5	199 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	WDR6	Q9NNW5	1121 aa	Known RBP	4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	C20orf141	Q9NUB4	165 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	BABAM1	Q9NWV8	329 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	NCKIPSD	Q9NZQ3	722 aa		4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044	ORC3	Q9UBD5	711 aa	Predicted RBP	4.06	□□□□□ -1.76
PTCD3-209	ENST00000472044		A0A1W2PPC1	479 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	DDTL	A6NHG4	134 aa	Predicted RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	HMGB1P1	B2RPK0	211 aa	Predicted RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	MDM4	O15151	490 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	LDLRAD4	O15165	306 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	TGFB1I1	O43294	461 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	TACC1	O75410	805 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	MMP3	P08254	477 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	HSPA1A	P0DMV8	641 aa	Known RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	HSPA1B	P0DMV9	641 aa	Known RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	CHRNB1	P11230	501 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	ENO3	P13929	434 aa	Predicted RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	TTK	P33981	857 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	GABRB2	P47870	512 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	RASSF2	P50749	326 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	RPL7A	P62424	266 aa	Known RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	RBMS2	Q15434	407 aa	Known RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	TXNDC8	Q6A555	127 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	DPY19L2P1	Q6NXN4	242 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	MZT2B	Q6NZ67	158 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	C4orf50	Q6ZRC1	276 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	B4GALNT4	Q76KP1	1039 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	PCGF5	Q86SE9	256 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	GPSM1	Q86YR5	675 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	CAMK1D	Q8IU85	385 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	FAM217A	Q8IXS0	508 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	RBFA	Q8N0V3	343 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	CADM3	Q8N126	398 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	ARFGAP1	Q8N6T3	406 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	LRRC57	Q8N9N7	239 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	ETNPPL	Q8TBG4	499 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	TMEM174	Q8WUU8	243 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	RPL36AL	Q969Q0	106 aa	Known RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	KLHL29	Q96CT2	875 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	TREX2	Q9BQ50	279 aa	Predicted RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	RANBP17	Q9H2T7	1088 aa	Known RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	KLHL31	Q9H511	634 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	FZD3	Q9NPG1	666 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	SNTG1	Q9NSN8	517 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	TRNAU1AP	Q9NX07	287 aa	Known RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	HEY2	Q9UBP5	337 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	PLEKHB1	Q9UF11	243 aa	Predicted RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	RAP2C	Q9Y3L5	183 aa		4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	COL3A1	P02461	1466 aa	Predicted RBP	4.05	□□□□□ -1.76
PTCD3-209	ENST00000472044	PI4KAP2	A4QPH2	592 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	SEC14L2	O76054	403 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	EPN2	O95208	641 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	SCGB1D1	O95968	90 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	FGF2	P09038	288 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	SLC2A4	P14672	509 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	ZNF8	P17098	575 aa	Predicted RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	CTPS1	P17812	591 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	RFC1	P35251	1148 aa	Predicted RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	BSG	P35613	385 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	RGS2	P41220	211 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	MMP13	P45452	471 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	POLD2	P49005	469 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	ALDH7A1	P49419	539 aa	Known RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	HARS2	P49590	506 aa	Known RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	EFNA5	P52803	228 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	GAD2	Q05329	585 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	LMOD3	Q0VAK6	560 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	FOXD4	Q12950	439 aa	Predicted RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	ERV3-1	Q14264	604 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	KRT32	Q14532	448 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	TWIST1	Q15672	202 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	TBCE	Q15813	527 aa	Predicted RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	GSTA3	Q16772	222 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	CCDC142	Q17RM4	750 aa		4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044	PLEKHO1	Q53GL0	409 aa	Predicted RBP	4.04	□□□□□ -1.76
PTCD3-209	ENST00000472044		Q5PR19	223 aa		4.04	□□□□□ -1.76

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