RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 CCDC13Q8IYE1 715 aa20.09■□□□□ 0.81
COL9A3-204ENST00000463487 HDDC3Q8N4P3 179 aa20.09■□□□□ 0.81
COL9A3-204ENST00000463487 NKD2Q969F2 451 aaPredicted RBP20.09■□□□□ 0.81
COL9A3-204ENST00000463487 TUBGCP5Q96RT8 1024 aa20.09■□□□□ 0.81
COL9A3-204ENST00000463487 HEMGNQ9BXL5 484 aa20.09■□□□□ 0.81
COL9A3-204ENST00000463487 LHX3Q9UBR4 397 aa20.09■□□□□ 0.81
COL9A3-204ENST00000463487 INVSQ9Y283 1065 aa20.09■□□□□ 0.81
COL9A3-204ENST00000463487 A0A1W2PP55 124 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 MTSS1O43312 755 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 LEFTY1O75610 366 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 LMNAP02545 664 aaKnown RBP20.08■□□□□ 0.81
COL9A3-204ENST00000463487 PYGMP11217 842 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 PPIDQ08752 370 aaKnown RBP20.08■□□□□ 0.81
COL9A3-204ENST00000463487 SLC10A7Q0GE19 358 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 AP1B1Q10567 949 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 SLC10A2Q12908 348 aaPredicted RBP20.08■□□□□ 0.81
COL9A3-204ENST00000463487 LLGL1Q15334 1064 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 RALGPS1Q5JS13 557 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 CFAP58Q5T655 872 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 FAM124AQ86V42 546 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 PAF1Q8N7H5 531 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 TTC13Q8NBP0 860 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 TSEN2Q8NCE0 465 aaKnown RBP20.08■□□□□ 0.81
COL9A3-204ENST00000463487 CHST14Q8NCH0 376 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 FOXJ1Q92949 421 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 TOE1Q96GM8 510 aaKnown RBP20.08■□□□□ 0.81
COL9A3-204ENST00000463487 ZC3H10Q96K80 434 aaKnown RBP20.08■□□□□ 0.81
COL9A3-204ENST00000463487 PCED1AQ9H1Q7 454 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 TRMT1Q9NXH9 659 aaKnown RBP20.08■□□□□ 0.81
COL9A3-204ENST00000463487 RAPGEFL1Q9UHV5 662 aa20.08■□□□□ 0.81
COL9A3-204ENST00000463487 SMG5Q9UPR3 1016 aaKnown RBP20.08■□□□□ 0.81
COL9A3-204ENST00000463487 PLXND1Q9Y4D7 1925 aa20.08■□□□□ 0.8
COL9A3-204ENST00000463487 LRRC72A6NJI9 287 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 PROB1E7EW31 1015 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 CCNB1P14635 433 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 AP1S1P61966 158 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 ZNF211Q13398 564 aaPredicted RBP20.07■□□□□ 0.8
COL9A3-204ENST00000463487 LAIR1Q6GTX8 287 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 NPNTQ6UXI9 565 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 FAM160A2Q8N612 972 aaPredicted RBP20.07■□□□□ 0.8
COL9A3-204ENST00000463487 OR6K2Q8NGY2 324 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 TFB1MQ8WVM0 346 aaKnown RBP20.07■□□□□ 0.8
COL9A3-204ENST00000463487 MAML1Q92585 1016 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 HAUS1Q96CS2 278 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 EXOC2Q96KP1 924 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 OLFM3Q96PB7 478 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 CPEB1Q9BZB8 566 aaKnown RBP20.07■□□□□ 0.8
COL9A3-204ENST00000463487 POLR1EQ9GZS1 481 aaKnown RBP20.07■□□□□ 0.8
COL9A3-204ENST00000463487 CARD9Q9H257 536 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 ATP13A3Q9H7F0 1226 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 WSB2Q9NYS7 404 aaPredicted RBP20.07■□□□□ 0.8
COL9A3-204ENST00000463487 EVLQ9UI08 416 aaPredicted RBP20.07■□□□□ 0.8
COL9A3-204ENST00000463487 TPX2Q9ULW0 747 aaKnown RBP20.07■□□□□ 0.8
COL9A3-204ENST00000463487 JRKLQ9Y4A0 524 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 WASF2Q9Y6W5 498 aa20.07■□□□□ 0.8
COL9A3-204ENST00000463487 EML5Q05BV3 1969 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.06■□□□□ 0.8
COL9A3-204ENST00000463487 HACD1B0YJ81 288 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 CTSLP07711 333 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 CES1P23141 567 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 ITGB7P26010 798 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 SERPINA4P29622 427 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 DPP6P42658 865 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 SCNN1BP51168 640 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 NEK3P51956 506 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 XRCC4Q13426 336 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 POM121L1PQ3SYA9 428 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 PLK5Q496M5 336 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 ZNF805Q5CZA5 627 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 SYCP2LQ5T4T6 812 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 FBXL19Q6PCT2 694 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 GDPD4Q6W3E5 623 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 SRLQ86TD4 932 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 REXO1L1PQ8IX06 675 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 AADATQ8N5Z0 425 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 TEX26Q8N6G2 289 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 CADM4Q8NFZ8 388 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 LOXL4Q96JB6 756 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 ZNF641Q96N77 438 aaPredicted RBP20.06■□□□□ 0.8
COL9A3-204ENST00000463487 LGMNQ99538 433 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 MGME1Q9BQP7 344 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 HDAC8Q9BY41 377 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 KDM4CQ9H3R0 1056 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 SCUBE2Q9NQ36 999 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 GMEB2Q9UKD1 530 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 SARDHQ9UL12 918 aa20.06■□□□□ 0.8
COL9A3-204ENST00000463487 SHROOM3Q8TF72 1996 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 KCNK3O14649 394 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 SEMA4FO95754 770 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 PEX11BO96011 259 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 UGT2B4P06133 528 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 BCKDHBP21953 392 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 BCL2L1Q07817 233 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 ITKQ08881 620 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 PMS2CLQ68D20 193 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 OR14C36Q8NHC7 312 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 NUDCD1Q96RS6 583 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 GPR174Q9BXC1 333 aa20.05■□□□□ 0.8
COL9A3-204ENST00000463487 DUSP15Q9H1R2 295 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-204ENST00000463487 NEUROG2Q9H2A3 272 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms