RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 YDJCA8MPS7 323 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 CLOCKO15516 846 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 TADA2AO75478 443 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 SULT1C4O75897 302 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 IL18RAPO95256 599 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 SLC7A1P30825 629 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 PTPN9P43378 593 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 C1QTNF8P60827 252 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 PITX1P78337 314 aaPredicted RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 MERTKQ12866 999 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 NFATC3Q12968 1075 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 FASTKQ14296 549 aaKnown RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 AMHR2Q16671 573 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 RGS21Q2M5E4 152 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 TRIM16LQ309B1 348 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 PPP1R26Q5T8A7 1209 aaPredicted RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 EEPD1Q7L9B9 569 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 ZNF567Q8N184 647 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 Q8N9G6 341 aaPredicted RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 KDM1BQ8NB78 822 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 HPS1Q92902 700 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 DAPK2Q9UIK4 370 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 WDR81Q562E7 1941 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 INO80B-WBP1J3KQ70 363 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 EI24O14681 340 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 TRIM24O15164 1050 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 NDUFB5O43674 189 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 IDO1P14902 403 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 IREB2P48200 963 aaKnown RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 GJA9P57773 515 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 BFSP2Q13515 415 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 LRP8Q14114 963 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 USP10Q14694 798 aaKnown RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 ANO4Q32M45 955 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 IFNEQ86WN2 208 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 DHFR2Q86XF0 187 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 CHPT1Q8WUD6 406 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 CASP10Q92851 521 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 NXNL1Q96CM4 212 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 CCDC97Q96F63 343 aaPredicted RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 OSBPL2Q9H1P3 480 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 VPS33BQ9H267 617 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 SIAEQ9HAT2 523 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 FANCEQ9HB96 536 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 LTB4R2Q9NPC1 389 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 POLE4Q9NR33 117 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 GPRC5DQ9NZD1 345 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 SUCOQ9UBS9 1254 aaKnown RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 MORF4L1Q9UBU8 362 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 CDH7Q9ULB5 785 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 NRXN2Q9P2S2 1712 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 KIAA1217Q5T5P2 1943 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 TCRBV3S1A0A5B6 114 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 MRASO14807 208 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 AXIN1O15169 862 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 ZNF12P17014 697 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 LRPAP1P30533 357 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 IDUAP35475 653 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 PRKAA1Q13131 559 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 DNASE1L3Q13609 305 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 PGS1Q32NB8 556 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 TSTD2Q5T7W7 516 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 JADE1Q6IE81 842 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 PPP4R4Q6NUP7 873 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 ACOT1Q86TX2 421 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 PARP8Q8N3A8 854 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 TMCO5AQ8N6Q1 288 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 CNTD1Q8N815 330 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 C7orf31Q8N865 590 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 MAGEE2Q8TD90 523 aaPredicted RBP11.84□□□□□ -0.51
CPSF3-202ENST00000460593 NGLY1Q96IV0 654 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 TCF12Q99081 682 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 ZNF670Q9BS34 389 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 MRPL4Q9BYD3 311 aaKnown RBP11.84□□□□□ -0.51
CPSF3-202ENST00000460593 UNC93B1Q9H1C4 597 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 PIF1Q9H611 641 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 GBA2Q9HCG7 927 aaPredicted RBP11.84□□□□□ -0.51
CPSF3-202ENST00000460593 IPO11Q9UI26 975 aaKnown RBP11.84□□□□□ -0.51
CPSF3-202ENST00000460593 CNTNAP1P78357 1384 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 ZCWPW2A0A1B0GU75 182 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 DYNC1LI2O43237 492 aaPredicted RBP11.84□□□□□ -0.51
CPSF3-202ENST00000460593 SNAP29O95721 258 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 MTHFD1P11586 935 aaKnown RBP11.84□□□□□ -0.51
CPSF3-202ENST00000460593 LCP1P13796 627 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 MFSD4BQ5TF39 518 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 SNRNP48Q6IEG0 339 aaKnown RBP11.84□□□□□ -0.51
CPSF3-202ENST00000460593 ZYG11AQ6WRX3 759 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 TTC30AQ86WT1 665 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 SREK1Q8WXA9 508 aaKnown RBP11.84□□□□□ -0.51
CPSF3-202ENST00000460593 CSF3RQ99062 836 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 TLK1Q9UKI8 766 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 PTGDR2Q9Y5Y4 395 aa11.84□□□□□ -0.51
CPSF3-202ENST00000460593 KLRG2A4D1S0 409 aaPredicted RBP11.83□□□□□ -0.51
CPSF3-202ENST00000460593 LACTBL1A8MY62 500 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 TPD52L2O43399 206 aaKnown RBP11.83□□□□□ -0.51
CPSF3-202ENST00000460593 MAN1A2O60476 641 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 NCK1P16333 377 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 CES1P23141 567 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 NMBRP28336 390 aa11.83□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms