RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 CCP110O43303 1012 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 PIAS2O75928 621 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 ABL2P42684 1182 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 GSCP56915 257 aaPredicted RBP17.37■□□□□ 0.37
TRIM39-209ENST00000428728 GEMIN4P57678 1058 aaKnown RBP17.37■□□□□ 0.37
TRIM39-209ENST00000428728 RPS21P63220 83 aaKnown RBP17.37■□□□□ 0.37
TRIM39-209ENST00000428728 TARDBPQ13148 414 aaKnown RBP eCLIP17.37■□□□□ 0.37
TRIM39-209ENST00000428728 POLD3Q15054 466 aaPredicted RBP17.37■□□□□ 0.37
TRIM39-209ENST00000428728 ZNF542PQ5EBM4 170 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 ATXN7L2Q5T6C5 722 aaPredicted RBP17.37■□□□□ 0.37
TRIM39-209ENST00000428728 DNAJC24Q6P3W2 148 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 WDR59Q6PJI9 974 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 Q6ZSR6 202 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 MON1BQ7L1V2 547 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 TMC6Q7Z403 805 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 PDZD3Q86UT5 571 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 PHF13Q86YI8 300 aaPredicted RBP17.37■□□□□ 0.37
TRIM39-209ENST00000428728 PYROXD2Q8N2H3 581 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 C3orf20Q8ND61 904 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 CENPIQ92674 756 aaPredicted RBP17.37■□□□□ 0.37
TRIM39-209ENST00000428728 NTAN1Q96AB6 310 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 ISG20Q96AZ6 181 aaKnown RBP17.37■□□□□ 0.37
TRIM39-209ENST00000428728 MCEEQ96PE7 176 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 SLC17A9Q9BYT1 436 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 MAGEH1Q9H213 219 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 DNAJC28Q9NX36 388 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 LIMA1Q9UHB6 759 aaKnown RBP17.37■□□□□ 0.37
TRIM39-209ENST00000428728 GGT7Q9UJ14 662 aa17.37■□□□□ 0.37
TRIM39-209ENST00000428728 CELSR3Q9NYQ7 3312 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 POM121BA6NF01 834 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 C16orf96A6NNT2 1141 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 NEMP1O14524 444 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 AP1G1O43747 822 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 PAK4O96013 591 aaPredicted RBP17.36■□□□□ 0.37
TRIM39-209ENST00000428728 UGT2B4P06133 528 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 CDK11BP21127 795 aaKnown RBP17.36■□□□□ 0.37
TRIM39-209ENST00000428728 ACP1P24666 158 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 SNRPD1P62314 119 aaKnown RBP17.36■□□□□ 0.37
TRIM39-209ENST00000428728 ZNF211Q13398 564 aaPredicted RBP17.36■□□□□ 0.37
TRIM39-209ENST00000428728 ILKQ13418 452 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 EFHC2Q5JST6 749 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 LRRC73Q5JTD7 316 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 SCYL2Q6P3W7 929 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 KYAT3Q6YP21 454 aaKnown RBP17.36■□□□□ 0.37
TRIM39-209ENST00000428728 SLFN11Q7Z7L1 901 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 NETO2Q8NC67 525 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 OR2AP1Q8NGE2 309 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 OR4C6Q8NH72 309 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 FEM1CQ96JP0 617 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 LRP4O75096 1905 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 SHROOM3Q8TF72 1996 aa17.36■□□□□ 0.37
TRIM39-209ENST00000428728 ANKRD62A6NC57 917 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 IGLON5A6NGN9 336 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 BUB1O43683 1085 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 TMCC1O94876 653 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 GSRP00390 522 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 EPHB2P29323 1055 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 SEMG2Q02383 582 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 ZNF805Q5CZA5 627 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 KDM7AQ6ZMT4 941 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 AOPEPQ8N6M6 819 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 LRIG1Q96JA1 1093 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 BMFQ96LC9 184 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 ERGIC2Q96RQ1 377 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 AGPAT1Q99943 283 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 RETREG1Q9H6L5 497 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 SCUBE2Q9NQ36 999 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 AK5Q9Y6K8 562 aa17.35■□□□□ 0.37
TRIM39-209ENST00000428728 SIGLEC16A6NMB1 481 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 KDELR3O43731 214 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 CREB3O43889 395 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 NEBLO76041 1014 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 MYF5P13349 255 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 RPL7AP62424 266 aaKnown RBP17.34■□□□□ 0.37
TRIM39-209ENST00000428728 INSM1Q01101 510 aaPredicted RBP17.34■□□□□ 0.37
TRIM39-209ENST00000428728 C1QBPQ07021 282 aaKnown RBP17.34■□□□□ 0.37
TRIM39-209ENST00000428728 SGCGQ13326 291 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 PLPP6Q8IY26 295 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 COL27A1Q8IZC6 1860 aaPredicted RBP17.34■□□□□ 0.37
TRIM39-209ENST00000428728 RTL3Q8N8U3 475 aaKnown RBP17.34■□□□□ 0.37
TRIM39-209ENST00000428728 FAM174AQ8TBP5 190 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 GDAP1L1Q96MZ0 367 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 KLHL32Q96NJ5 620 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 KLC2Q9H0B6 622 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 NOL6Q9H6R4 1146 aaKnown RBP17.34■□□□□ 0.37
TRIM39-209ENST00000428728 GPR27Q9NS67 375 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 CLCA2Q9UQC9 943 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 HS3ST3A1Q9Y663 406 aa17.34■□□□□ 0.37
TRIM39-209ENST00000428728 CXorf51AA0A1B0GTR3 108 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 TCRBV5S1A1TA0A578 114 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 ZSCAN5CA6NGD5 496 aaPredicted RBP17.33■□□□□ 0.36
TRIM39-209ENST00000428728 GOLGA6L22H0YM25 854 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 FPGTO14772 594 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 SPINT1O43278 529 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 TSPAN6O43657 245 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 GIMD1P0DJR0 217 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 ALPPL2P10696 532 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 ATP1A3P13637 1013 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 RABIFP47224 123 aa17.33■□□□□ 0.36
TRIM39-209ENST00000428728 ZNF143P52747 638 aaPredicted RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms