RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 BTBD9Q96Q07 612 aa10□□□□□ -0.81
SS18-203ENST00000415083 MPHOSPH6Q99547 160 aaKnown RBP10□□□□□ -0.81
SS18-203ENST00000415083 EPAS1Q99814 870 aa10□□□□□ -0.81
SS18-203ENST00000415083 ILKAPQ9H0C8 392 aaPredicted RBP10□□□□□ -0.81
SS18-203ENST00000415083 PCDHAC1Q9H158 963 aa10□□□□□ -0.81
SS18-203ENST00000415083 DMAP1Q9NPF5 467 aaPredicted RBP10□□□□□ -0.81
SS18-203ENST00000415083 ADARB2Q9NS39 739 aaKnown RBP10□□□□□ -0.81
SS18-203ENST00000415083 FLRT1Q9NZU1 646 aa10□□□□□ -0.81
SS18-203ENST00000415083 GTF3C5Q9Y5Q8 519 aaPredicted RBP10□□□□□ -0.81
SS18-203ENST00000415083 KLHL33A6NCF5 533 aa10□□□□□ -0.81
SS18-203ENST00000415083 KCNU1A8MYU2 1149 aa10□□□□□ -0.81
SS18-203ENST00000415083 F2P00734 622 aa10□□□□□ -0.81
SS18-203ENST00000415083 HNRNPLP14866 589 aaKnown RBP eCLIP10□□□□□ -0.813e-8■■■■□ 22.8
SS18-203ENST00000415083 YBX3P16989 372 aaKnown RBP eCLIP10□□□□□ -0.81
SS18-203ENST00000415083 LRPAP1P30533 357 aa10□□□□□ -0.81
SS18-203ENST00000415083 PPARGP37231 505 aaPredicted RBP10□□□□□ -0.81
SS18-203ENST00000415083 SLC1A2P43004 574 aa10□□□□□ -0.81
SS18-203ENST00000415083 CXCR3P49682 368 aa10□□□□□ -0.81
SS18-203ENST00000415083 TPI1P60174 286 aa10□□□□□ -0.81
SS18-203ENST00000415083 SULT2A1Q06520 285 aa10□□□□□ -0.81
SS18-203ENST00000415083 ZRSR2Q15696 482 aaKnown RBP10□□□□□ -0.81
SS18-203ENST00000415083 ANO4Q32M45 955 aa10□□□□□ -0.81
SS18-203ENST00000415083 GRAMD1BQ3KR37 738 aa10□□□□□ -0.81
SS18-203ENST00000415083 IL23RQ5VWK5 629 aa10□□□□□ -0.81
SS18-203ENST00000415083 SEL1L3Q68CR1 1132 aa10□□□□□ -0.81
SS18-203ENST00000415083 C8orf82Q6P1X6 216 aaPredicted RBP10□□□□□ -0.81
SS18-203ENST00000415083 CD300LGQ6UXG3 332 aa10□□□□□ -0.81
SS18-203ENST00000415083 CHSY3Q70JA7 882 aa10□□□□□ -0.81
SS18-203ENST00000415083 TAC4Q86UU9 113 aa10□□□□□ -0.81
SS18-203ENST00000415083 FAM35AQ86V20 835 aa10□□□□□ -0.81
SS18-203ENST00000415083 TOP6BLQ8N6T0 577 aa10□□□□□ -0.81
SS18-203ENST00000415083 KYQ8NBH2 561 aa10□□□□□ -0.81
SS18-203ENST00000415083 LRCH3Q96II8 777 aa10□□□□□ -0.81
SS18-203ENST00000415083 SLC45A3Q96JT2 553 aa10□□□□□ -0.81
SS18-203ENST00000415083 SLC9A7Q96T83 725 aa10□□□□□ -0.81
SS18-203ENST00000415083 CCDC28BQ9BUN5 200 aa10□□□□□ -0.81
SS18-203ENST00000415083 TKTL2Q9H0I9 626 aa10□□□□□ -0.81
SS18-203ENST00000415083 RHOJQ9H4E5 214 aa10□□□□□ -0.81
SS18-203ENST00000415083 OR12D3Q9UGF7 316 aa10□□□□□ -0.81
SS18-203ENST00000415083 BCAS2O75934 225 aaPredicted RBP9.99□□□□□ -0.81
SS18-203ENST00000415083 IGLV3-25P01717 112 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 TAS2R39P59534 338 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 LAMB3Q13751 1172 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 PTK2BQ14289 1009 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 POU6F1Q14863 301 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 NADK2Q4G0N4 442 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 OR6J1Q8NGC5 347 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 ZFP28Q8NHY6 868 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 RP9Q8TA86 221 aaKnown RBP9.99□□□□□ -0.81
SS18-203ENST00000415083 HEXDCQ8WVB3 486 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 TMEM209Q96SK2 561 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 TREX1Q9NSU2 369 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 BFARQ9NZS9 450 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 GNEQ9Y223 722 aaKnown RBP9.99□□□□□ -0.81
SS18-203ENST00000415083 MYO16Q9Y6X6 1858 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 TXNDC9O14530 226 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 TRIM24O15164 1050 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 MAFKO60675 156 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 WISP3O95389 354 aaPredicted RBP9.99□□□□□ -0.81
SS18-203ENST00000415083 RPL10P27635 214 aaKnown RBP9.99□□□□□ -0.81
SS18-203ENST00000415083 TIAL1Q01085 375 aaKnown RBP eCLIP9.99□□□□□ -0.81
SS18-203ENST00000415083 CYLC2Q14093 348 aaPredicted RBP9.99□□□□□ -0.81
SS18-203ENST00000415083 LRP8Q14114 963 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 PPP2R5DQ14738 602 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 SLC5A9Q2M3M2 681 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 C6orf10Q5SRN2 563 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 PGAM4Q8N0Y7 254 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 SPPL2BQ8TCT7 592 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 ANKRD49Q8WVL7 239 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 ATP6V1E2Q96A05 226 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 NMD3Q96D46 503 aaKnown RBP9.99□□□□□ -0.81
SS18-203ENST00000415083 SGF29Q96ES7 293 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 EPB41L1Q9H4G0 881 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 WDR41Q9HAD4 459 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 IRAK4Q9NWZ3 460 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 DDIT4Q9NX09 232 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 C6orf203Q9P0P8 240 aaPredicted RBP9.99□□□□□ -0.81
SS18-203ENST00000415083 PRPF19Q9UMS4 504 aaKnown RBP9.99□□□□□ -0.81
SS18-203ENST00000415083 AP4B1Q9Y6B7 739 aa9.99□□□□□ -0.81
SS18-203ENST00000415083 SMIM35A0A1B0GVV1 85 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 E7ENX8 843 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 CABYRO75952 493 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 PEX11BO96011 259 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 CD4P01730 458 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 THRAP10827 490 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 CYP2C9P11712 490 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 ENO3P13929 434 aaPredicted RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 TCN1P20061 433 aaPredicted RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 NPY2RP49146 381 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 CLCNKBP51801 687 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 NDNQ99608 321 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 SLC29A1Q99808 456 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 ATXN3LQ9H3M9 355 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 TXNDC16Q9P2K2 825 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 LZTS1Q9Y250 596 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 HEMK1Q9Y5R4 338 aaPredicted RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 CFLARO15519 480 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 TIMM44O43615 452 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 HUS1O60921 280 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 VAPBO95292 243 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms