RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 ELF1P32519 619 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 MAP2K2P36507 400 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 PRAMEP78395 509 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 ELAVL2Q12926 359 aaKnown RBP11.27□□□□□ -0.6
TCOF1-203ENST00000394269 ZNF789Q5FWF6 425 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 DENND5AQ6IQ26 1287 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 LINGO4Q6UY18 593 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 WDR75Q8IWA0 830 aaKnown RBP11.27□□□□□ -0.6
TCOF1-203ENST00000394269 SCML4Q8N228 414 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 LRRC43Q8N309 656 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 RMDN1Q96DB5 314 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 SMIM14Q96QK8 99 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 TBC1D10AQ9BXI6 508 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 MRPL9Q9BYD2 267 aaKnown RBP11.27□□□□□ -0.6
TCOF1-203ENST00000394269 NMRAL1Q9HBL8 299 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 ENTPD7Q9NQZ7 604 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.27□□□□□ -0.6
TCOF1-203ENST00000394269 THAP1Q9NVV9 213 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 SIRPGQ9P1W8 387 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 COPG2Q9UBF2 871 aa11.27□□□□□ -0.6
TCOF1-203ENST00000394269 BPTFQ12830 3046 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 GOLGA8QA0A0J9YX86 632 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 LOC100653049A0A140TA62 436 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 GOLGA8OA6NCC3 632 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 GOLGA8NF8WBI6 632 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 NEMP1O14524 444 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 GYG2O15488 501 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 KRT34O76011 436 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 CCNFP41002 786 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 SLC1A2P43004 574 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 ALDH1A3P47895 512 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 UBAP2LQ14157 1087 aaKnown RBP11.27□□□□□ -0.61
TCOF1-203ENST00000394269 MRPL58Q14197 206 aaKnown RBP11.27□□□□□ -0.61
TCOF1-203ENST00000394269 PDPK2PQ6A1A2 396 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 NADSYN1Q6IA69 706 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 NEPROQ6NW34 567 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 DNMT3LQ9UJW3 386 aa11.27□□□□□ -0.61
TCOF1-203ENST00000394269 C2orf78A6NCI8 922 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 CFAP73A6NFT4 308 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 HOXA2O43364 376 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 MAGEA11P43364 429 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 PLK1P53350 603 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 HNRNPDQ14103 355 aaKnown RBP11.26□□□□□ -0.61
TCOF1-203ENST00000394269 BTG3Q14201 252 aaPredicted RBP11.26□□□□□ -0.61
TCOF1-203ENST00000394269 PCLAFQ15004 111 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 ICE2Q659A1 982 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 CNSTQ6PJW8 725 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 CYS1Q717R9 158 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 BEND5Q7L4P6 421 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 OTOP2Q7RTS6 562 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 EXT2Q93063 718 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 HDAC10Q969S8 669 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 MCUR1Q96AQ8 359 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 C1orf74Q96LT6 269 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 PLK2Q9NYY3 685 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 ZBBXA8MT70 800 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 INPPL1O15357 1258 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 PSMD3O43242 534 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 TIMM44O43615 452 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 ATP6V1G2O95670 118 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 SLC6A4P31645 630 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 SERPINH1P50454 418 aaKnown RBP11.26□□□□□ -0.61
TCOF1-203ENST00000394269 CSHL1Q14406 222 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 TIFABQ6ZNK6 161 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 ZC3HC1Q86WB0 502 aaKnown RBP11.26□□□□□ -0.61
TCOF1-203ENST00000394269 REM2Q8IYK8 340 aaPredicted RBP11.26□□□□□ -0.61
TCOF1-203ENST00000394269 POU5F2Q8N7G0 328 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 OR52K2Q8NGK3 314 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 KIFC1Q9BW19 673 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 MUC3BQ9H195 1237 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 ELAC1Q9H777 363 aaKnown RBP11.26□□□□□ -0.61
TCOF1-203ENST00000394269 CYP4F12Q9HCS2 524 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 OLA1Q9NTK5 396 aaKnown RBP11.26□□□□□ -0.61
TCOF1-203ENST00000394269 CLIC5Q9NZA1 410 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 FAM95CA0A1B0GW59 222 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 PITPNM1O00562 1244 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 COCHO43405 550 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 BNIP3LO60238 219 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 GNRH1P01148 92 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 PROCP04070 461 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 FGF3P11487 239 aaPredicted RBP11.26□□□□□ -0.61
TCOF1-203ENST00000394269 SYN1P17600 705 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 NAGLUP54802 743 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 OCRLQ01968 901 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 IHHQ14623 411 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 LBRQ14739 615 aaKnown RBP11.26□□□□□ -0.61
TCOF1-203ENST00000394269 HECTD3Q5T447 861 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 RANBP10Q6VN20 620 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 CEP97Q8IW35 865 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 KCNV2Q8TDN2 545 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 NXNL1Q96CM4 212 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 RNF38Q9H0F5 515 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 SLC25A51Q9H1U9 297 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 TRPM5Q9NZQ8 1165 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 FBXO5Q9UKT4 447 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 HBS1LQ9Y450 684 aaKnown RBP11.26□□□□□ -0.61
TCOF1-203ENST00000394269 TCAF1Q9Y4C2 921 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 ARL5AQ9Y689 179 aa11.26□□□□□ -0.61
TCOF1-203ENST00000394269 MUSKO15146 869 aa11.25□□□□□ -0.61
TCOF1-203ENST00000394269 PAMP19021 973 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms