RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 DDHD1Q8NEL9 900 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 ACMSDQ8TDX5 336 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 HASPINQ8TF76 798 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 CHPT1Q8WUD6 406 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 ISOC1Q96CN7 298 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 LPIN3Q9BQK8 851 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 PAIP1Q9H074 479 aaKnown RBP11.29□□□□□ -0.6
CUX1-204ENST00000393824 UGT1A7Q9HAW7 530 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 UGT1A10Q9HAW8 530 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 UGT1A8Q9HAW9 530 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 PALMDQ9NP74 551 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 PAK5Q9P286 719 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 EMCNQ9ULC0 261 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 HEY1Q9Y5J3 304 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 SPTBN5Q9NRC6 3674 aaKnown RBP11.29□□□□□ -0.6
CUX1-204ENST00000393824 TANC1Q9C0D5 1861 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 ARHGEF37A1IGU5 675 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 EIF3FO00303 357 aaPredicted RBP11.29□□□□□ -0.6
CUX1-204ENST00000393824 PIRO00625 290 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 BCAS2O75934 225 aaPredicted RBP11.29□□□□□ -0.6
CUX1-204ENST00000393824 DDHD2O94830 711 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 FUCA1P04066 466 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 TFPTP0C1Z6 253 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 KRT3P12035 628 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 XRCC1P18887 633 aaPredicted RBP11.29□□□□□ -0.6
CUX1-204ENST00000393824 TRPC1P48995 793 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 THOP1P52888 689 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 SLC5A3P53794 718 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 YWHAEP62258 255 aaKnown RBP11.29□□□□□ -0.6
CUX1-204ENST00000393824 RPL10AP62906 217 aaKnown RBP11.29□□□□□ -0.6
CUX1-204ENST00000393824 ROR1Q01973 937 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 MGAT5BQ3V5L5 792 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 FAXCQ5TGI0 409 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 MROH9Q5TGP6 573 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 NIPAL1Q6NVV3 410 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 C16orf46Q6P387 395 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 WDTC1Q8N5D0 677 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 KYQ8NBH2 561 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 PLEKHA8Q96JA3 519 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 LENG8Q96PV6 779 aaPredicted RBP11.29□□□□□ -0.6
CUX1-204ENST00000393824 GPATCH1Q9BRR8 931 aaKnown RBP11.29□□□□□ -0.6
CUX1-204ENST00000393824 SEZ6LQ9BYH1 1024 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 NIF3L1Q9GZT8 377 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 CISHQ9NSE2 258 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 UBQLN1Q9UMX0 589 aaKnown RBP11.29□□□□□ -0.6
CUX1-204ENST00000393824 DOLKQ9UPQ8 538 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 SLC8A2Q9UPR5 921 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 SNX9Q9Y5X1 595 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 RALGAPA2Q2PPJ7 1873 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 XPO1O14980 1071 aaKnown RBP11.28□□□□□ -0.6
CUX1-204ENST00000393824 PLIN3O60664 434 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 CLASP2O75122 1294 aaKnown RBP11.28□□□□□ -0.6
CUX1-204ENST00000393824 PBX3P40426 434 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 RXRGP48443 463 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 TTC3P53804 2025 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 MS4A2Q01362 244 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 TFDP2Q14188 446 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 PDCD11Q14690 1871 aaKnown RBP11.28□□□□□ -0.6
CUX1-204ENST00000393824 NOMO1Q15155 1222 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 SMUG1Q53HV7 270 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 ZNF362Q5T0B9 420 aaPredicted RBP11.28□□□□□ -0.6
CUX1-204ENST00000393824 VWA5B1Q5TIE3 1220 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 EPGNQ6UW88 154 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 CD300LGQ6UXG3 332 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 BNC2Q6ZN30 1099 aaPredicted RBP11.28□□□□□ -0.6
CUX1-204ENST00000393824 CYS1Q717R9 158 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 C16orf59Q7L2K0 433 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 GPR141Q7Z602 305 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 RFX6Q8HWS3 928 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 CENPSQ8N2Z9 138 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 ARFGAP1Q8N6T3 406 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 KCTD6Q8NC69 237 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 GRIN3AQ8TCU5 1115 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 PDCD6IPQ8WUM4 868 aaKnown RBP11.28□□□□□ -0.6
CUX1-204ENST00000393824 C12orf43Q96C57 262 aaKnown RBP11.28□□□□□ -0.6
CUX1-204ENST00000393824 FAF2Q96CS3 445 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 RTP4Q96DX8 246 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 RMND5BQ96G75 393 aaPredicted RBP11.28□□□□□ -0.6
CUX1-204ENST00000393824 CDRT15Q96T59 188 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 MRPL45Q9BRJ2 306 aaKnown RBP11.28□□□□□ -0.6
CUX1-204ENST00000393824 CLK4Q9HAZ1 481 aaKnown RBP11.28□□□□□ -0.6
CUX1-204ENST00000393824 EBF1Q9UH73 591 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 ALPK3Q96L96 1907 aa11.28□□□□□ -0.6
CUX1-204ENST00000393824 RGSL1A5PLK6 1076 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.27□□□□□ -0.6
CUX1-204ENST00000393824 GLRA3O75311 464 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 ENDOD1O94919 500 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 TOP3BO95985 862 aaKnown RBP11.27□□□□□ -0.6
CUX1-204ENST00000393824 THP07101 528 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 GSTT2P0CG29 244 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 GSTT2BP0CG30 244 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 GLDCP23378 1020 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 EPHA3P29320 983 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 ARRB2P32121 409 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 RFC1P35251 1148 aaPredicted RBP11.27□□□□□ -0.6
CUX1-204ENST00000393824 TMED10P49755 219 aaKnown RBP11.27□□□□□ -0.6
CUX1-204ENST00000393824 C21orf59P57076 290 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 LILRA4P59901 499 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 ESRRGP62508 458 aa11.27□□□□□ -0.6
CUX1-204ENST00000393824 RBP5P82980 135 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms