RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 OR52K2Q8NGK3 314 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 HPSEQ9Y251 543 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 SCN2BO60939 215 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 AVILO75366 819 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 RTN3O95197 1032 aaPredicted RBP13.84□□□□□ -0.19
COL4A1-201ENST00000375820 MAGP20916 626 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 NR2C2P49116 596 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 SEMA5AQ13591 1074 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 NDUFA5Q16718 116 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 OR52L1Q8NGH7 329 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 PSMA8Q8TAA3 256 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 PLEKHG4BQ96PX9 1271 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 ELOVL4Q9GZR5 314 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 RNF208Q9H0X6 261 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 TRHDEQ9UKU6 1024 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 PCDHA11Q9Y5I1 949 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 HNRNPLP14866 589 aaKnown RBP eCLIP13.84□□□□□ -0.19
COL4A1-201ENST00000375820 WARSP23381 471 aaKnown RBP13.84□□□□□ -0.19
COL4A1-201ENST00000375820 RCVRNP35243 200 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 BUD31P41223 144 aaPredicted RBP13.84□□□□□ -0.19
COL4A1-201ENST00000375820 GRIA4P48058 902 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 NAGLUP54802 743 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 WASHC2DQ5SRD0 308 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 ZNF540Q8NDQ6 660 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 ARIH1Q9Y4X5 557 aaPredicted RBP13.84□□□□□ -0.19
COL4A1-201ENST00000375820 PLOD3O60568 738 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 TRIM3O75382 744 aaPredicted RBP13.84□□□□□ -0.19
COL4A1-201ENST00000375820 NR2F1P10589 423 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 TNFSF9P41273 254 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 PACS1Q6VY07 963 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 ZNF354BQ96LW1 612 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 EGFL7Q9UHF1 273 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 H3BMM5 538 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 SHMT1P34896 483 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 CXCL17Q6UXB2 119 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 CNPY4Q8N129 248 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 CXorf40BQ96DE9 158 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 FAM84AQ96KN4 292 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 PRKD2Q9BZL6 878 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 BHLHE41Q9C0J9 482 aaPredicted RBP13.84□□□□□ -0.19
COL4A1-201ENST00000375820 KIAA1683Q9H0B3 1180 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 ZNF304Q9HCX3 659 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.84□□□□□ -0.19
COL4A1-201ENST00000375820 NEXMIFQ5QGS0 1516 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 NT5C1B-RDH14C9J2C7 533 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 SCAMP1O15126 338 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 FFAR2O15552 330 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 XYLBO75191 536 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 PSMG1O95456 288 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 PGK1P00558 417 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 CYP1A1P04798 512 aaPredicted RBP13.83□□□□□ -0.19
COL4A1-201ENST00000375820 AMIGO2Q86SJ2 522 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 CLHC1Q8NHS4 586 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 PNPT1Q8TCS8 783 aaKnown RBP13.83□□□□□ -0.19
COL4A1-201ENST00000375820 MCRS1Q96EZ8 462 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 MECRQ9BV79 373 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 L2HGDHQ9H9P8 463 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 ZNF232Q9UNY5 417 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 GMPPBQ9Y5P6 360 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 NFASCO94856 1347 aa13.83□□□□□ -0.19
COL4A1-201ENST00000375820 SLC25A12O75746 678 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 PDE9AO76083 593 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 ABATP80404 500 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 CTBP1Q13363 440 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 FAM187BQ17R55 369 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 TCEAL5Q5H9L2 206 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 SAMD4BQ5PRF9 694 aaKnown RBP13.83□□□□□ -0.2
COL4A1-201ENST00000375820 NEPROQ6NW34 567 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 KCNK18Q7Z418 384 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 KIAA0319LQ8IZA0 1049 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 HELQQ8TDG4 1101 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 MYO3AQ8NEV4 1616 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 TRBV23OR9-2A0A075B6M9 112 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 ISM1B1AKI9 464 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 LYPLA1O75608 230 aaPredicted RBP13.83□□□□□ -0.2
COL4A1-201ENST00000375820 PTPN1P18031 435 aaKnown RBP13.83□□□□□ -0.2
COL4A1-201ENST00000375820 INO80DQ53TQ3 878 aaPredicted RBP13.83□□□□□ -0.2
COL4A1-201ENST00000375820 CDKAL1Q5VV42 579 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 ALYREFQ86V81 257 aaKnown RBP13.83□□□□□ -0.2
COL4A1-201ENST00000375820 MLPHQ9BV36 600 aaPredicted RBP13.83□□□□□ -0.2
COL4A1-201ENST00000375820 EQTNQ9NQ60 294 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 TRPV2Q9Y5S1 764 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 SF3B1O75533 1304 aaKnown RBP eCLIP13.83□□□□□ -0.2
COL4A1-201ENST00000375820 GTPBP1O00178 669 aaKnown RBP13.83□□□□□ -0.2
COL4A1-201ENST00000375820 LTA4HP09960 611 aaKnown RBP13.83□□□□□ -0.2
COL4A1-201ENST00000375820 SLC12A3P55017 1021 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 ZNHIT3Q15649 155 aaPredicted RBP13.83□□□□□ -0.2
COL4A1-201ENST00000375820 PAGE2BQ5JRK9 111 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 PEG10Q86TG7 708 aaKnown RBP13.83□□□□□ -0.2
COL4A1-201ENST00000375820 DNERQ8NFT8 737 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 ADCY10Q96PN6 1610 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.83□□□□□ -0.2
COL4A1-201ENST00000375820 BTN3A3O00478 584 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 CASP5P51878 434 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 SEC23AQ15436 765 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 KRT73Q86Y46 540 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 CAB39LQ9H9S4 337 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 U3KQV3 271 aa13.83□□□□□ -0.2
COL4A1-201ENST00000375820 OR5F1O95221 314 aa13.82□□□□□ -0.2
COL4A1-201ENST00000375820 ATP5BP06576 529 aaKnown RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms