RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PTPRNQ16849 979 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 ZNF618Q5T7W0 954 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 SH3PXD2AQ5TCZ1 1133 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 MAGEE2Q8TD90 523 aaPredicted RBP7.43□□□□□ -1.22
VPS13A-202ENST00000357409 MCCC2Q9HCC0 563 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 TAS2R13Q9NYV9 303 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 PACS1Q6VY07 963 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 SRLQ86TD4 932 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 MTMR9Q96QG7 549 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 SLC9A7Q96T83 725 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 PRDM12Q9H4Q4 367 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 A0A1B0GTH6 734 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 FAM25EA8MYX2 175 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CES2O00748 559 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CD151P48509 253 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 RPL38P63173 70 aaKnown RBP7.43□□□□□ -1.22
VPS13A-202ENST00000357409 PABPC1LQ4VXU2 614 aaKnown RBP7.43□□□□□ -1.22
VPS13A-202ENST00000357409 TEDDM1Q5T9Z0 273 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 SLC8B1Q6J4K2 584 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 TMEM26Q6ZUK4 368 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 RASGRP3Q8IV61 690 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 PYROXD2Q8N2H3 581 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 OR7D4Q8NG98 312 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 SNRNP25Q9BV90 132 aaKnown RBP7.43□□□□□ -1.22
VPS13A-202ENST00000357409 BTBD7Q9P203 1132 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 MAFFQ9ULX9 164 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 ENTPD4Q9Y227 616 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 UGT1A9O60656 530 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 VIPP01282 170 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 TYRP1P17643 537 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 UGT1A6P19224 532 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 UGT1A1P22309 533 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 UGT1A4P22310 534 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 UGT1A3P35503 534 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 UGT1A5P35504 534 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CBFBQ13951 182 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 TXNDC8Q6A555 127 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 POLR1EQ9GZS1 481 aaKnown RBP7.43□□□□□ -1.22
VPS13A-202ENST00000357409 CDT1Q9H211 546 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 UGT1A7Q9HAW7 530 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 UGT1A10Q9HAW8 530 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 UGT1A8Q9HAW9 530 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 C3orf18Q9UK00 162 aa7.43□□□□□ -1.22
VPS13A-202ENST00000357409 GPC6Q9Y625 555 aaPredicted RBP7.43□□□□□ -1.22
VPS13A-202ENST00000357409 WNT7AO00755 349 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 SLC28A2O43868 658 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 SLC12A3P55017 1021 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 POU5F1Q01860 360 aaKnown RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 PLEKHA7Q6IQ23 1121 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 KANSL1Q7Z3B3 1105 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 RERGQ96A58 199 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 CATSPERZQ9NTU4 200 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 VPS4AQ9UN37 437 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 CPSF1Q10570 1443 aaKnown RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 LOC100506127A0A0U1RQW1 187 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 TRUB2O95900 331 aaKnown RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 FDFT1P37268 417 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 NAGLUP54802 743 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 PTPAQ15257 358 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 C1orf94Q6P1W5 598 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 SMYD1Q8NB12 490 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 UHRF1Q96T88 793 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 C6orf62Q9GZU0 229 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 POLR1BQ9H9Y6 1135 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 HCN2Q9UL51 889 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 CUL7Q14999 1698 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 FAM237BA0A1B0GVD1 139 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 EIF3DO15371 548 aaKnown RBP eCLIP7.42□□□□□ -1.223e-6■■□□□ 12.2
VPS13A-202ENST00000357409 CHKAP35790 457 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 GNPDA1P46926 289 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 ATXN7L2Q5T6C5 722 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 ZCCHC8Q6NZY4 707 aaKnown RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 FAM126BQ8IXS8 530 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 MCOLN2Q8IZK6 566 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 C15orf38-AP3S2A0A0A6YYH1 394 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 ARHGEF33A8MVX0 844 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 SHBGP04278 402 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 GLI1P08151 1106 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 SH3GL2Q99962 352 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 TPSD1Q9BZJ3 242 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 ELOVL2Q9NXB9 296 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 NDUFAF1Q9Y375 327 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 A0A1W2PPM1 405 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 LRRC72A6NJI9 287 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 GLUD1P00367 558 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 PEX6Q13608 980 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 ATAT1Q5SQI0 421 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 KLHL17Q6TDP4 642 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 KIAA1683Q9H0B3 1180 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 UXTQ9UBK9 157 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 GABRQQ9UN88 632 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 PHF24Q9UPV7 400 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 CFAP73A6NFT4 308 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 KCNH1O95259 989 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 CSN2P05814 226 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 PPP4CP60510 307 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 SLC25A3Q00325 362 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 GRASPQ7Z6J2 395 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-202ENST00000357409 LINC00523Q86TU6 105 aa7.42□□□□□ -1.22
VPS13A-202ENST00000357409 RAVER1Q8IY67 606 aaKnown RBP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms