RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PTGIRP43119 386 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 HCAR3P49019 387 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 NDST2P52849 883 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 FASTKD3Q14CZ7 662 aaKnown RBP9.34□□□□□ -0.91
USP4-202ENST00000351842 TAZQ16635 292 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 LEXMQ3ZCV2 418 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 UBAP2Q5T6F2 1119 aaKnown RBP9.34□□□□□ -0.91
USP4-202ENST00000351842 TMCO4Q5TGY1 634 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 PKN3Q6P5Z2 889 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 SETD3Q86TU7 594 aaPredicted RBP9.34□□□□□ -0.91
USP4-202ENST00000351842 GJD3Q8N144 294 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 BBS5Q8N3I7 341 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 OTUD6BQ8N6M0 293 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 HDAC11Q96DB2 347 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 IFT43Q96FT9 208 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 CFAP36Q96G28 342 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 SPATA13Q96N96 652 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 HOMER3Q9NSC5 361 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 TBC1D30Q9Y2I9 924 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 CFAP54Q96N23 3096 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 TECTAO75443 2155 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 MATN3O15232 486 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 PRAMEF11O60813 436 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 TMEM63AO94886 807 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 PENKP01210 267 aaPredicted RBP9.34□□□□□ -0.91
USP4-202ENST00000351842 ITGAVP06756 1048 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 ALPIP09923 528 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 SRCP12931 536 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 IL12RB1P42701 662 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 FNTAP49354 379 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 NIPAL4Q0D2K0 466 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 ZNF234Q14588 700 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 SLC44A4Q53GD3 710 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 ARTNQ5T4W7 220 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 CPXM2Q8N436 756 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 ZNF276Q8N554 614 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 RPLP0P6Q8NHW5 317 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 NKD2Q969F2 451 aaPredicted RBP9.34□□□□□ -0.91
USP4-202ENST00000351842 BPIFA1Q9NP55 256 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 DONSONQ9NYP3 566 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 RAB21Q9UL25 225 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 CHMP2BQ9UQN3 213 aa9.34□□□□□ -0.91
USP4-202ENST00000351842 CNOT1A5YKK6 2376 aaKnown RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 CACNG3O60359 315 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 ECI2O75521 394 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 DLDP09622 509 aaKnown RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 CCNHP51946 323 aaPredicted RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 YBEYP58557 167 aaPredicted RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 ZP2Q05996 745 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 ANO7Q6IWH7 933 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 STK40Q8N2I9 435 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 DEFB119Q8N690 84 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 FAM3CQ92520 227 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 KLK6Q92876 244 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 RAB17Q9H0T7 212 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 C2orf42Q9NWW7 574 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 SEPT3Q9UH03 358 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 FEZ2Q9UHY8 353 aaPredicted RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 MIA3Q5JRA6 1907 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 DOCK9Q9BZ29 2069 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 KDELR3O43731 214 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 KLF8O95600 359 aaPredicted RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 ABL2P42684 1182 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 PSMD8P48556 350 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 PRKD1Q15139 912 aaPredicted RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 ARSIQ5FYB1 569 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 CERCAMQ5T4B2 595 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 TIGD7Q6NT04 549 aaPredicted RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 KIAA1324Q6UXG2 1013 aaKnown RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 ZBED8Q8IZ13 594 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 AHI1Q8N157 1196 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 DCAF4L2Q8NA75 395 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 FAM71BQ8TC56 605 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 HMGB4Q8WW32 186 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 POLR1EQ9GZS1 481 aaKnown RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 SAYSD1Q9NPB0 183 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 ARGLU1Q9NWB6 273 aaPredicted RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 EPS15L1Q9UBC2 864 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 ERVW-1Q9UQF0 538 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 EFR3BQ9Y2G0 817 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 TICRRQ7Z2Z1 1910 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 MUC6Q6W4X9 2439 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 CES2O00748 559 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 SYNCRIPO60506 623 aaKnown RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 SIN3BO75182 1162 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 XPAP23025 273 aaPredicted RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 PRKCHP24723 683 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 STIP1P31948 543 aaKnown RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 SERPINH1P50454 418 aaKnown RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 WNT3AP56704 352 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 LMNB2Q03252 620 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 IL10RBQ08334 325 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 GRSF1Q12849 480 aaKnown RBP eCLIP9.33□□□□□ -0.92
USP4-202ENST00000351842 PDIA2Q13087 525 aaKnown RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 IHHQ14623 411 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 CYTH1Q15438 398 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 UAP1Q16222 522 aaPredicted RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 TTC39BQ5VTQ0 682 aaPredicted RBP9.33□□□□□ -0.92
USP4-202ENST00000351842 KDM7AQ6ZMT4 941 aa9.33□□□□□ -0.92
USP4-202ENST00000351842 IFT20Q8IY31 132 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms