RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CIB4A0PJX0 185 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 SLC16A3O15427 465 aaKnown RBP8.51□□□□□ -1.05
HMGB1-203ENST00000341423 SOAT2O75908 522 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 RPS3AP61247 264 aaKnown RBP8.51□□□□□ -1.05
HMGB1-203ENST00000341423 SPPL3Q8TCT6 385 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 CPT1BQ92523 772 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 NCLNQ969V3 563 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 RAB7BQ96AH8 199 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 TADA1Q96BN2 335 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 LRFN3Q9BTN0 628 aa8.51□□□□□ -1.05
HMGB1-203ENST00000341423 TTC4O95801 387 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 GUCY2FP51841 1108 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 IL2P60568 153 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 TAF13Q15543 124 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 AP5B1Q2VPB7 878 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 PLEKHG4Q58EX7 1191 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 PITRM1Q5JRX3 1037 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 TOR1AIP1Q5JTV8 583 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 STPG1Q5TH74 334 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 RHOT1Q8IXI2 618 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 FAM13CQ8NE31 585 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 ECHDC3Q96DC8 303 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 ARL5BQ96KC2 179 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 GAL3ST4Q96RP7 486 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 DEFB126Q9BYW3 111 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 TKTL2Q9H0I9 626 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 PNMA8BQ9ULN7 279 aaPredicted RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 SCN2BO60939 215 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 FUT2Q10981 343 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 ERMP1Q7Z2K6 904 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 ZC3H18Q86VM9 953 aaKnown RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 ELOA2Q8IYF1 753 aaPredicted RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 PDCD7Q8N8D1 485 aaKnown RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 SLC5A5Q92911 643 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 RBM18Q96H35 190 aaKnown RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 TACO1Q9BSH4 297 aaKnown RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 RAB11FIP5Q9BXF6 653 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 KRCC1Q9NPI7 259 aaPredicted RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 BACE2Q9Y5Z0 518 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 DNMT3AQ9Y6K1 912 aaPredicted RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 ZNF891A8MT65 544 aaPredicted RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 F8W810 466 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 KCNK3O14649 394 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 TP53I11O14683 189 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 GUCA1CO95843 209 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 GLRA2P23416 452 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 CLCN1P35523 988 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 RAB33AQ14088 237 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 STK40Q8N2I9 435 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 OR2T34Q8NGX1 318 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 MAGOHBQ96A72 148 aaKnown RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 OTULINQ96BN8 352 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 ZNF514Q96K75 400 aaPredicted RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 SUSD3Q96L08 255 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 ANKHQ9HCJ1 492 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 AGO1Q9UL18 857 aaKnown RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 PCDHGA5Q9Y5G8 931 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 ASTN1O14525 1302 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 A0A087X0T9 212 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 GNG14A0A1W2PPG7 69 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 MGAT4DA6NG13 374 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 ENO4A6NNW6 628 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 IDSB3KWA1 339 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 STAU1O95793 577 aaKnown RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 CCDC130P13994 396 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 PSMD4P55036 377 aaKnown RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 PNOCQ13519 176 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 KRT72Q14CN4 511 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 MB21D2Q8IYB1 491 aaPredicted RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 TAGAPQ8N103 731 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 BRSK1Q8TDC3 778 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 SHC3Q92529 594 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 CALR3Q96L12 384 aaKnown RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 SLC25A23Q9BV35 468 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 CNGB3Q9NQW8 809 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 METTL5Q9NRN9 209 aaKnown RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 CLCA3PQ9Y6N3 262 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 A0A1W2PP55 124 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 HIST1H2ABP04908 130 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 NTHL1P78549 312 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 HIST3H2AQ7L7L0 130 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 MFSD6LQ8IWD5 586 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 OR5M3Q8NGP4 307 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 HIST1H2ACQ93077 130 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 NKD1Q969G9 470 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 RNF25Q96BH1 459 aaPredicted RBP8.5□□□□□ -1.05
HMGB1-203ENST00000341423 SLC2A11Q9BYW1 496 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 FAM83DQ9H4H8 585 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 ASB8Q9H765 288 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 LZTFL1Q9NQ48 299 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 NSMCE4AQ9NXX6 385 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 CLEC1BQ9P126 229 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 IL36AQ9UHA7 158 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 ADAMTS1Q9UHI8 967 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 PCDHB10Q9UN67 800 aa8.5□□□□□ -1.05
HMGB1-203ENST00000341423 CCDC66A2RUB6 948 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 GALR2O43603 387 aaPredicted RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 RNGTTO60942 597 aaKnown RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 C5AR1P21730 350 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 RAP1GAPP47736 663 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms