RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 SPIRE1Q08AE8 756 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 RBM48Q5RL73 367 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 HACD4Q5VWC8 232 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 NAIF1Q69YI7 327 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 GDPGP1Q6ZNW5 385 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 FUKQ8N0W3 1084 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 MAB21L3Q8N8X9 362 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 HTR3CQ8WXA8 447 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 INTS10Q9NVR2 710 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 TRAF6Q9Y4K3 522 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 ABCA3Q99758 1704 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TDRD15B5MCY1 1934 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 NPHP3-ACAD11A0A0J9YXS1 232 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 AP3D1O14617 1153 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 ATP9AO75110 1047 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SLITRK5O94991 958 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SCAF4O95104 1147 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 PTGS2P35354 604 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SLC12A3P55017 1021 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 FGL1Q08830 312 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 LACTB2Q53H82 288 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 ATXN7L2Q5T6C5 722 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 FAXCQ5TGI0 409 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 BSPRYQ5W0U4 402 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 C16orf62Q7Z3J2 963 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 RBFAQ8N0V3 343 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 NIFKQ9BYG3 293 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 FBRSQ9HAH7 460 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 MRPS33Q9Y291 106 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 KCNE2Q9Y6J6 123 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 UBE2QL1A1L167 161 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 C17orf102A2RUQ5 167 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 COMTP21964 271 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 HALP42357 657 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 GABRB2P47870 512 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 GCLMP48507 274 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SLC25A52Q3SY17 297 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 IFNL1Q8IU54 200 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 MOAP1Q96BY2 351 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SH2D3AQ9BRG2 576 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 RNF112Q9ULX5 631 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 NUP205Q92621 2012 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 HS6ST1O60243 411 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 CD151P48509 253 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SCN1BQ07699 218 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 ZNF177Q13360 481 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 DDIASQ8IXT1 998 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TMEM169Q96HH4 297 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 FICDQ9BVA6 458 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 RHOJQ9H4E5 214 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SMYD3Q9H7B4 428 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 BAIAP2Q9UQB8 552 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 ACO1P21399 889 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 CXCR5P32302 372 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TAS2R43P59537 309 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 IL31RAQ8NI17 732 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 C12orf66Q96MD2 445 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 PLGRKTQ9HBL7 147 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 NXF1Q9UBU9 619 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 CDH9Q9ULB4 789 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 RGPD3A6NKT7 1758 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 RGPD4Q7Z3J3 1758 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 STRCQ7RTU9 1775 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 PRORSD1PA6NEY8 169 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 MYL12BO14950 172 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SNRPB2P08579 225 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 FGFR1P11362 822 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TUBP50607 506 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 ARPC4P59998 168 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 ZNF45Q02386 682 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 AKT1S1Q96B36 256 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 CINPQ9BW66 212 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 PIKFYVEQ9Y2I7 2098 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 NEMP1O14524 444 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 DNALI1O14645 258 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 ATP1A1P05023 1023 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 FESP07332 822 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 RPP38P78345 283 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 TBL3Q12788 808 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 DHDDSQ86SQ9 333 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 GPC2Q8N158 579 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 OTUD7AQ8TE49 926 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 CENPIQ92674 756 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 DACT3Q96B18 629 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 MCEEQ96PE7 176 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 BBS4Q96RK4 519 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SH3BP1Q9Y3L3 701 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SCN2BO60939 215 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TSPAN9O75954 239 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SASH3O75995 380 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SLC16A2P36021 539 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SLC1A6P48664 564 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 PRR5P85299 388 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 KCTD21Q4G0X4 260 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 FTMTQ8N4E7 242 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 IPCEF1Q8WWN9 437 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 OXNAD1Q96HP4 312 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 MARK4Q96L34 752 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 WRNIP1Q96S55 665 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms