RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 PAQR9Q6ZVX9 377 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 TMEM135Q86UB9 458 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 TLK2Q86UE8 772 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 UNC93AQ86WB7 457 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 CEP97Q8IW35 865 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 METTL25Q8N6Q8 603 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 NAT9Q9BTE0 207 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 WDR41Q9HAD4 459 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 RNF186Q9NXI6 227 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 GTSE1Q9NYZ3 720 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 IGSF9Q9P2J2 1179 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 GMPR2Q9P2T1 348 aaKnown RBP10.19□□□□□ -0.78
LIG3-201ENST00000262327 XPR1Q9UBH6 696 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 STK39Q9UEW8 545 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 SLC2A6Q9UGQ3 507 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 C9IYK1 514 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 HDAC3O15379 428 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 VAPBO95292 243 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 STAU1O95793 577 aaKnown RBP10.19□□□□□ -0.78
LIG3-201ENST00000262327 GNRH1P01148 92 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 AHSGP02765 367 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 THRAP10827 490 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 MYL4P12829 197 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 GJA9P57773 515 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 POU5F1BQ06416 359 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 RALGDSQ12967 914 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 CYTH1Q15438 398 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 ZNF423Q2M1K9 1284 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 NOMO2Q5JPE7 1267 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 OGFRL1Q5TC84 451 aaPredicted RBP10.19□□□□□ -0.78
LIG3-201ENST00000262327 RWDD4Q6NW29 188 aaKnown RBP10.19□□□□□ -0.78
LIG3-201ENST00000262327 NT5DC4Q86YG4 428 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 ARRDC4Q8NCT1 418 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 IPMKQ8NFU5 416 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 WNT8BQ93098 351 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 SLC35B4Q969S0 331 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 NPY6RQ99463 290 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 ARHGAP39Q9C0H5 1083 aa10.19□□□□□ -0.78
LIG3-201ENST00000262327 EIF2B3Q9NR50 452 aaKnown RBP10.19□□□□□ -0.78
LIG3-201ENST00000262327 RRN3P2A6NIE6 340 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 KCNU1A8MYU2 1149 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 ZNF487B1APH4 448 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 DFFAO00273 331 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 AURKAO14965 403 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 DLX3O60479 287 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 KPNA6O60684 536 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 PFDN1O60925 122 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 PENKP01210 267 aaPredicted RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 TFAP2AP05549 437 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 PTPN1P18031 435 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 NOS2P35228 1153 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 FLT3LGP49771 235 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 AFF1P51825 1210 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 NADK2Q4G0N4 442 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 CYP2R1Q6VVX0 501 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 CLEC20AQ6ZU45 233 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 CLEC14AQ86T13 490 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 IFNLR1Q8IU57 520 aaPredicted RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 MFSD6LQ8IWD5 586 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 LSMEM2Q8N112 164 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 CRYBG2Q8N1P7 616 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 ATP6V1E2Q96A05 226 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 GABRQQ9UN88 632 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 DUSP11O75319 330 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 CLPTM1O96005 669 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 PABPC4LP0CB38 370 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 CYBAP13498 195 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 NAT1P18440 290 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 ACADSBP45954 432 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 USP46P62068 366 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 PITRM1Q5JRX3 1037 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 SH2D4BQ5SQS7 431 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 ESRP1Q6NXG1 681 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 AMIGO2Q86SJ2 522 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 TMEM151AQ8N4L1 468 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 LRRC52Q8N7C0 313 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 GRIN3AQ8TCU5 1115 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 DNAJB3Q8WWF6 145 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 HSFY1Q96LI6 401 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 DUSP16Q9BY84 665 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 CASS4Q9NQ75 786 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 CHST12Q9NRB3 414 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 STAP1Q9ULZ2 295 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 CDYLQ9Y232 598 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 RAP2CQ9Y3L5 183 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 MTF2Q9Y483 593 aaPredicted RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 COPG1Q9Y678 874 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 SLC4A7Q9Y6M7 1214 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 XPO1O14980 1071 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 RNASEH2AO75792 299 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 MPOP05164 745 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 SLC35E2BP0CK96 405 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 NPR3P17342 541 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 RPL10P27635 214 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 MAGEA12P43365 314 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 VEGFBP49765 207 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 TAF6P49848 677 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 LILRA4P59901 499 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 NKX3-2P78367 333 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 MYBPC1Q00872 1141 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms