RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 SGCGQ13326 291 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 FGL2Q14314 439 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 NR0B2Q15466 257 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 TCEA2Q15560 299 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 MEA1Q16626 185 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 TMEM259Q4ZIN3 620 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 KIAA1161Q6NSJ0 714 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 LRRC31Q6UY01 552 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 RBM44Q6ZP01 1051 aaKnown RBP15.32■□□□□ 0.04
SYNE2-228ENST00000639659 RBFAQ8N0V3 343 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 TTC9Q92623 222 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 FEM1CQ96JP0 617 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 IL12RB2Q99665 862 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 SRRTQ9BXP5 876 aaKnown RBP15.32■□□□□ 0.04
SYNE2-228ENST00000639659 HDAC8Q9BY41 377 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 CLMPQ9H6B4 373 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 WDCPQ9H6R7 721 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 PLCB1Q9NQ66 1216 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 TMPRSS4Q9NRS4 437 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 COL6A6A6NMZ7 2263 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 A0A1W2PNU3 283 aaPredicted RBP15.31■□□□□ 0.04
SYNE2-228ENST00000639659 BECN2A8MW95 431 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 B8ZZF3 427 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 FPGTO14772 594 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 SRGAP2O75044 1071 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 CSF2P04141 144 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 NME1P15531 152 aaKnown RBP15.31■□□□□ 0.04
SYNE2-228ENST00000639659 TFE3P19532 575 aaPredicted RBP15.31■□□□□ 0.04
SYNE2-228ENST00000639659 OR1E1P30953 314 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 NOS2P35228 1153 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 PPP1R2P41236 205 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 RABIFP47224 123 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 CLCN6P51797 869 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 DEUP1Q05D60 604 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 MTA1Q13330 715 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 C1orf61Q13536 156 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 PERM1Q5SV97 790 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 OLFML1Q6UWY5 402 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 CCDC81Q6ZN84 652 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 PARS2Q7L3T8 475 aaKnown RBP15.31■□□□□ 0.04
SYNE2-228ENST00000639659 DCP2Q8IU60 420 aaKnown RBP15.31■□□□□ 0.04
SYNE2-228ENST00000639659 WDTC1Q8N5D0 677 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 OR6K2Q8NGY2 324 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 SPATA20Q8TB22 786 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 IFT43Q96FT9 208 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 WBP1Q96G27 269 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 TM6SF2Q9BZW4 377 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 ATP13A1Q9HD20 1204 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 ANLNQ9NQW6 1124 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 KLF15Q9UIH9 416 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 ITM2BQ9Y287 266 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 FCF1Q9Y324 198 aaKnown RBP15.31■□□□□ 0.04
SYNE2-228ENST00000639659 ENTPD2Q9Y5L3 495 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 HS3ST3A1Q9Y663 406 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 WASF2Q9Y6W5 498 aa15.31■□□□□ 0.04
SYNE2-228ENST00000639659 SPTY2D1-AS1A0A0U1RR47 76 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 IGLON5A6NGN9 336 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 CYSRT1A8MQ03 144 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 AGRPO00253 132 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 CASC3O15234 703 aaKnown RBP15.3■□□□□ 0.04
SYNE2-228ENST00000639659 TNFSF15O95150 251 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 GNA14O95837 355 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 ITGB7P26010 798 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 CCNHP51946 323 aaPredicted RBP15.3■□□□□ 0.04
SYNE2-228ENST00000639659 SLC6A3Q01959 620 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 PAK1Q13153 545 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 KIF26BQ2KJY2 2108 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 PTPN20Q4JDL3 420 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 PRRT3Q5FWE3 981 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 TPRG1LQ5T0D9 272 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 OTUD1Q5VV17 481 aaPredicted RBP15.3■□□□□ 0.04
SYNE2-228ENST00000639659 RETSATQ6NUM9 610 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 TRIM65Q6PJ69 517 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 ENOSF1Q7L5Y1 443 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 SETD3Q86TU7 594 aaPredicted RBP15.3■□□□□ 0.04
SYNE2-228ENST00000639659 DRC7Q8IY82 874 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 ARL14Q8N4G2 192 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 FAM174AQ8TBP5 190 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 CCDC97Q96F63 343 aaPredicted RBP15.3■□□□□ 0.04
SYNE2-228ENST00000639659 SLC46A1Q96NT5 459 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 HEPHQ9BQS7 1158 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 PDCL3Q9H2J4 239 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 TCEAL2Q9H3H9 227 aaPredicted RBP15.3■□□□□ 0.04
SYNE2-228ENST00000639659 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.3■□□□□ 0.04
SYNE2-228ENST00000639659 NCKIPSDQ9NZQ3 722 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 APOBEC3BQ9UH17 382 aaKnown RBP15.3■□□□□ 0.04
SYNE2-228ENST00000639659 GGT7Q9UJ14 662 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 STAP1Q9ULZ2 295 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 FADS3Q9Y5Q0 445 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 ACTL7AQ9Y615 435 aa15.3■□□□□ 0.04
SYNE2-228ENST00000639659 PPP1R3GB7ZBB8 358 aa15.29■□□□□ 0.04
SYNE2-228ENST00000639659 SPINT1O43278 529 aa15.29■□□□□ 0.04
SYNE2-228ENST00000639659 SLC9A1P19634 815 aa15.29■□□□□ 0.04
SYNE2-228ENST00000639659 L1CAMP32004 1257 aa15.29■□□□□ 0.04
SYNE2-228ENST00000639659 GKP32189 559 aa15.29■□□□□ 0.04
SYNE2-228ENST00000639659 KRT9P35527 623 aa15.29■□□□□ 0.04
SYNE2-228ENST00000639659 SERPINH1P50454 418 aaKnown RBP15.29■□□□□ 0.04
SYNE2-228ENST00000639659 THOP1P52888 689 aa15.29■□□□□ 0.04
SYNE2-228ENST00000639659 SNX16P57768 344 aa15.29■□□□□ 0.04
SYNE2-228ENST00000639659 KCNC4Q03721 635 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms