RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 USP29Q9HBJ7 922 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 TMPRSS4Q9NRS4 437 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 THSD1Q9NS62 852 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 ARHGEF38Q9NXL2 777 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 IPO11Q9UI26 975 aaKnown RBP19.81■□□□□ 0.76
CLN3-262ENST00000637699 SATB2Q9UPW6 733 aa19.81■□□□□ 0.76
CLN3-262ENST00000637699 DRGXA6NNA5 263 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 CSF2P04141 144 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 OR1E1P30953 314 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 KRT9P35527 623 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 SULT1E1P49888 294 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 DNA2P51530 1060 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 SNX16P57768 344 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 LY6DQ14210 128 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 PTPN20Q4JDL3 420 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 BRMS1LQ5PSV4 323 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 ZCCHC8Q6NZY4 707 aaKnown RBP19.8■□□□□ 0.76
CLN3-262ENST00000637699 LRRC31Q6UY01 552 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 KYAT3Q6YP21 454 aaKnown RBP19.8■□□□□ 0.76
CLN3-262ENST00000637699 ELOA2Q8IYF1 753 aaPredicted RBP19.8■□□□□ 0.76
CLN3-262ENST00000637699 FEM1CQ96JP0 617 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.8■□□□□ 0.76
CLN3-262ENST00000637699 DPH1Q9BZG8 443 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 SEMA4CQ9C0C4 833 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 PLCB1Q9NQ66 1216 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.8■□□□□ 0.76
CLN3-262ENST00000637699 APEX2Q9UBZ4 518 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 WASF2Q9Y6W5 498 aa19.8■□□□□ 0.76
CLN3-262ENST00000637699 SPTY2D1-AS1A0A0U1RR47 76 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 H3BM21 787 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 ZNF821O75541 412 aaPredicted RBP19.79■□□□□ 0.76
CLN3-262ENST00000637699 ADRB3P13945 408 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 NME1P15531 152 aaKnown RBP19.79■□□□□ 0.76
CLN3-262ENST00000637699 RBMS1P29558 406 aaKnown RBP19.79■□□□□ 0.76
CLN3-262ENST00000637699 PTK2Q05397 1052 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 VAC14Q08AM6 782 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 DEFB133Q30KQ1 61 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 KIAA1161Q6NSJ0 714 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 GUSBP11Q6P575 273 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 CRTC1Q6UUV9 634 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 GBP6Q6ZN66 633 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 EFL1Q7Z2Z2 1120 aaKnown RBP19.79■□□□□ 0.76
CLN3-262ENST00000637699 PARGQ86W56 976 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 ZNF397Q8NF99 534 aaPredicted RBP19.79■□□□□ 0.76
CLN3-262ENST00000637699 SHC3Q92529 594 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 WBP1Q96G27 269 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 ATXN7L3BQ96GX2 97 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 GPR27Q9NS67 375 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 RRN3Q9NYV6 651 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 KLF15Q9UIH9 416 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 FADS3Q9Y5Q0 445 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 COL6A6A6NMZ7 2263 aa19.79■□□□□ 0.76
CLN3-262ENST00000637699 A0A1W2PNU3 283 aaPredicted RBP19.78■□□□□ 0.76
CLN3-262ENST00000637699 FAM170AA1A519 330 aa19.78■□□□□ 0.76
CLN3-262ENST00000637699 SRGAP2O75044 1071 aa19.78■□□□□ 0.76
CLN3-262ENST00000637699 FGFR1OPO95684 399 aaKnown RBP19.78■□□□□ 0.76
CLN3-262ENST00000637699 ITGB7P26010 798 aa19.78■□□□□ 0.76
CLN3-262ENST00000637699 L1CAMP32004 1257 aa19.78■□□□□ 0.76
CLN3-262ENST00000637699 RABIFP47224 123 aa19.78■□□□□ 0.76
CLN3-262ENST00000637699 DEUP1Q05D60 604 aa19.78■□□□□ 0.76
CLN3-262ENST00000637699 PDE1CQ14123 709 aaPredicted RBP19.78■□□□□ 0.76
CLN3-262ENST00000637699 LMX1AQ8TE12 382 aa19.78■□□□□ 0.76
CLN3-262ENST00000637699 TBCBQ99426 244 aa19.78■□□□□ 0.76
CLN3-262ENST00000637699 HEPHQ9BQS7 1158 aa19.78■□□□□ 0.76
CLN3-262ENST00000637699 STAP1Q9ULZ2 295 aa19.78■□□□□ 0.76
CLN3-262ENST00000637699 CSNK1G3Q9Y6M4 447 aa19.78■□□□□ 0.76
CLN3-262ENST00000637699 FPGTO14772 594 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 AQP9O43315 295 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 JUNDP17535 347 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 CCNHP51946 323 aaPredicted RBP19.77■□□□□ 0.76
CLN3-262ENST00000637699 SGCGQ13326 291 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 CARD16Q5EG05 197 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 TPRG1LQ5T0D9 272 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 RETSATQ6NUM9 610 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 FOXR1Q6PIV2 292 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 PARS2Q7L3T8 475 aaKnown RBP19.77■□□□□ 0.76
CLN3-262ENST00000637699 SLC47A2Q86VL8 602 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 C1orf74Q96LT6 269 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 SLC46A1Q96NT5 459 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 ATP13A1Q9HD20 1204 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 NCKIPSDQ9NZQ3 722 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 AJAP1Q9UKB5 411 aaPredicted RBP19.77■□□□□ 0.76
CLN3-262ENST00000637699 PAXBP1Q9Y5B6 917 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 ENTPD2Q9Y5L3 495 aa19.77■□□□□ 0.76
CLN3-262ENST00000637699 PIEZO2Q9H5I5 2752 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 IGLV3-10A0A075B6K4 115 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 ILVBLA1L0T0 632 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 IGLON5A6NGN9 336 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 SPINT1O43278 529 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 ZMPSTE24O75844 475 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 F9P00740 461 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 PNMA6AP0CW24 399 aaPredicted RBP19.76■□□□□ 0.75
CLN3-262ENST00000637699 SERPINH1P50454 418 aaKnown RBP19.76■□□□□ 0.75
CLN3-262ENST00000637699 SLC20A2Q08357 652 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 DRAP1Q14919 205 aaPredicted RBP19.76■□□□□ 0.75
CLN3-262ENST00000637699 EXOC3L4Q17RC7 722 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 ZDHHC17Q8IUH5 632 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 PCDH20Q8N6Y1 951 aaKnown RBP19.76■□□□□ 0.75
CLN3-262ENST00000637699 TTC9Q92623 222 aa19.76■□□□□ 0.75
CLN3-262ENST00000637699 NT5C3BQ969T7 300 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms