RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 RAB30Q15771 203 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 DUSP6Q16828 381 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 DENND5AQ6IQ26 1287 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 ADGRD1Q6QNK2 874 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 POTEHQ6S545 545 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 ZNF783Q6ZMS7 281 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 C12orf76Q8N812 135 aaPredicted RBP17.13■□□□□ 0.33
CLN3-252ENST00000636907 DDI1Q8WTU0 396 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 DCAKDQ8WVC6 231 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 NAT9Q9BTE0 207 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 SMYD2Q9NRG4 433 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 SAMD15Q9P1V8 674 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 SOBPA7XYQ1 873 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 CXorf49A8MYA2 514 aaPredicted RBP17.12■□□□□ 0.33
CLN3-252ENST00000636907 AP3B1O00203 1094 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 ATP9BO43861 1147 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 GJB3O75712 270 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 ALDH1A2O94788 518 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 CREB1P16220 341 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 CEBPBP17676 345 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 MZF1P28698 734 aaPredicted RBP17.12■□□□□ 0.33
CLN3-252ENST00000636907 WNT3AP56704 352 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 CRYMQ14894 314 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 PCSK7Q16549 785 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 MPPE1Q53F39 396 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 ELMSAN1Q6PJG2 1045 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 TPGS1Q6ZTW0 290 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 TAOK1Q7L7X3 1001 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 SLC44A1Q8WWI5 657 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 FSD1LQ9BXM9 530 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 POLR1EQ9GZS1 481 aaKnown RBP17.12■□□□□ 0.33
CLN3-252ENST00000636907 MOCS1Q9NZB8 636 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 CEP290O15078 2479 aa17.12■□□□□ 0.33
CLN3-252ENST00000636907 E2F8A0AVK6 867 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 FAM159BA6NKW6 160 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 CBX4O00257 560 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 PRAMEF12O95522 483 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 CSKP41240 450 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 ARF5P84085 180 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 CDH18Q13634 790 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 CES3Q6UWW8 571 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 RANBP10Q6VN20 620 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 KDELC2Q7Z4H8 507 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 MFN1Q8IWA4 741 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 UNC5BQ8IZJ1 945 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 PPM1NQ8N819 430 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 VN1R2Q8NFZ6 395 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 ING5Q8WYH8 240 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 SMG7Q92540 1137 aaKnown RBP17.11■□□□□ 0.33
CLN3-252ENST00000636907 TADA1Q96BN2 335 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 ZSWIM3Q96MP5 696 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 SEMA3CQ99985 751 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 SELENOSQ9BQE4 189 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 FEM1AQ9BSK4 669 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 IL22Q9GZX6 179 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 PIDD1Q9HB75 910 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 VPS45Q9NRW7 570 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 TDP1Q9NUW8 608 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 PLK2Q9NYY3 685 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 SEPT3Q9UH03 358 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 RPS6KL1Q9Y6S9 549 aa17.11■□□□□ 0.33
CLN3-252ENST00000636907 ZNF197O14709 1029 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 SNAP91O60641 907 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 POLBP06746 335 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 RFTN1Q14699 578 aaPredicted RBP17.1■□□□□ 0.33
CLN3-252ENST00000636907 SPANXN3Q5MJ09 141 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 TTC19Q6DKK2 380 aaPredicted RBP17.1■□□□□ 0.33
CLN3-252ENST00000636907 ALG1LQ6GMV1 187 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 CYS1Q717R9 158 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 TRABD2AQ86V40 505 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 CTAGE3PQ8IX95 158 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 SRRM1Q8IYB3 904 aaKnown RBP17.1■□□□□ 0.33
CLN3-252ENST00000636907 BBS5Q8N3I7 341 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 ALG14Q96F25 216 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 FCRL3Q96P31 734 aaPredicted RBP17.1■□□□□ 0.33
CLN3-252ENST00000636907 MGME1Q9BQP7 344 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 CINPQ9BW66 212 aaPredicted RBP17.1■□□□□ 0.33
CLN3-252ENST00000636907 CAPS2Q9BXY5 557 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 SLC28A3Q9HAS3 691 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 PSD3Q9NYI0 1048 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 MRPS23Q9Y3D9 190 aaKnown RBP17.1■□□□□ 0.33
CLN3-252ENST00000636907 OR51B4Q9Y5P0 310 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 RANBP2P49792 3224 aaKnown RBP17.1■□□□□ 0.33
CLN3-252ENST00000636907 MAGEB16A2A368 324 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 RFXAPO00287 272 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 ZMPSTE24O75844 475 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 INHBAP08476 426 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 KRT15P19012 456 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 CHRNA4P43681 627 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 GUCY1A3Q02108 690 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 NR1H3Q13133 447 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 KCNC3Q14003 757 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 CYTH1Q15438 398 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 ZNF77Q15935 545 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 MPP7Q5T2T1 576 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 TMC5Q6UXY8 1006 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 TMEM135Q86UB9 458 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 LRRC6Q86X45 466 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 ITFG1Q8TB96 612 aa17.1■□□□□ 0.33
CLN3-252ENST00000636907 MDM1Q8TC05 714 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms