RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TLR6Q9Y2C9 796 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 MOXD2PA6NHM9 499 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 MEI4A8MW99 385 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 B2RBV5 119 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 ANP32DO95626 131 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 WNT3AP56704 352 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 BIRC2Q13490 618 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 RIPK1Q13546 671 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 ZNF789Q5FWF6 425 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 ZC3HC1Q86WB0 502 aaKnown RBP10.77□□□□□ -0.68
CUX1-221ENST00000622516 CEP97Q8IW35 865 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 POU5F2Q8N7G0 328 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 BCL7CQ8WUZ0 217 aaPredicted RBP10.77□□□□□ -0.68
CUX1-221ENST00000622516 KCTD4Q8WVF5 259 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 INPP5DQ92835 1189 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 SGF29Q96ES7 293 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 SLC39A13Q96H72 371 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 CLPTM1LQ96KA5 538 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 RPRD1AQ96P16 312 aaPredicted RBP10.77□□□□□ -0.68
CUX1-221ENST00000622516 OMDQ99983 421 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 BTBD10Q9BSF8 475 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 TRIM62Q9BVG3 475 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 KIFC1Q9BW19 673 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 MARCH5Q9NX47 278 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 TMEM161AQ9NX61 479 aa10.77□□□□□ -0.68
CUX1-221ENST00000622516 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.77□□□□□ -0.68
CUX1-221ENST00000622516 ARHGEF37A1IGU5 675 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 MAGEB16A2A368 324 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 TBKBP1A7MCY6 615 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 ARVCFO00192 962 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 CCDC22O60826 627 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 DIAPH2O60879 1101 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 SELPP16109 830 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 ACVRL1P37023 503 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 PTPRCAPQ14761 206 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 PCID2Q5JVF3 399 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 FAM219BQ5XKK7 198 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 ZNF470Q6ECI4 717 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 TMCO2Q7Z6W1 182 aaPredicted RBP10.77□□□□□ -0.69
CUX1-221ENST00000622516 DEFB128Q7Z7B8 93 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 LINC00523Q86TU6 105 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 ZNF781Q8N8C0 355 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 CASD1Q96PB1 797 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 NDNQ99608 321 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 FBXO44Q9H4M3 255 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 NMRAL1Q9HBL8 299 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 SAR1AQ9NR31 198 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 LRFN2Q9ULH4 789 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 CDY1Q9Y6F8 540 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 MYLKQ15746 1914 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 MTMR11A4FU01 709 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 G3V2L1 256 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 KIF3CO14782 793 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 GSC2O15499 205 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 CACNG3O60359 315 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 ANXA9O76027 345 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 PEX11BO96011 259 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 PIRTP0C851 137 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 CD1EP15812 388 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 HOXC13P31276 330 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 SLC1A2P43004 574 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 ZNF135P52742 658 aaPredicted RBP10.77□□□□□ -0.69
CUX1-221ENST00000622516 PEX6Q13608 980 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 FUT10Q6P4F1 479 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 BEND5Q7L4P6 421 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 RNF135Q8IUD6 432 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 WDR75Q8IWA0 830 aaKnown RBP10.77□□□□□ -0.69
CUX1-221ENST00000622516 SHKBP1Q8TBC3 707 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 SCYL1Q96KG9 808 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 PPP1R12CQ9BZL4 782 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 ZYG11BQ9C0D3 744 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 WWP1Q9H0M0 922 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 MTF2Q9Y483 593 aaPredicted RBP10.77□□□□□ -0.69
CUX1-221ENST00000622516 KCTD3Q9Y597 815 aa10.77□□□□□ -0.69
CUX1-221ENST00000622516 PRRC2BQ5JSZ5 2229 aaKnown RBP10.76□□□□□ -0.69
CUX1-221ENST00000622516 INPPL1O15357 1258 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 SERPINE1P05121 402 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 CHRNGP07510 517 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 CALRP27797 417 aaKnown RBP10.76□□□□□ -0.69
CUX1-221ENST00000622516 HOXD10P28358 340 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 MTA1Q13330 715 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 NAB1Q13506 487 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 DNAJC14Q6Y2X3 702 aaPredicted RBP10.76□□□□□ -0.69
CUX1-221ENST00000622516 ARMCX6Q7L4S7 300 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 LZTR1Q8N653 840 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 MCUR1Q96AQ8 359 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 C8orf48Q96LL4 319 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 SP110Q9HB58 689 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.76□□□□□ -0.69
CUX1-221ENST00000622516 TLK1Q9UKI8 766 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 G3BP2Q9UN86 482 aaKnown RBP10.76□□□□□ -0.69
CUX1-221ENST00000622516 RUVBL2Q9Y230 463 aaKnown RBP10.76□□□□□ -0.69
CUX1-221ENST00000622516 SQORQ9Y6N5 450 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 A0A0D9SEW6 157 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 GOLGA8QA0A0J9YX86 632 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 GOLGA8OA6NCC3 632 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 OR51F1A6NGY5 319 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 GOLGA8NF8WBI6 632 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 IL1BP01584 269 aa10.76□□□□□ -0.69
CUX1-221ENST00000622516 CALB2P22676 271 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms