RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 MUC3BQ9H195 1237 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 CAB39LQ9H9S4 337 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 HBS1LQ9Y450 684 aaKnown RBP10.08□□□□□ -0.8
VTA1-205ENST00000620996 CBX4O00257 560 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 HMGA1P17096 107 aaKnown RBP10.08□□□□□ -0.8
VTA1-205ENST00000620996 GP5P40197 560 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 SERPINB4P48594 390 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 RPS6KA3P51812 740 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 SMAD3P84022 425 aaKnown RBP10.08□□□□□ -0.8
VTA1-205ENST00000620996 TMPRSS15P98073 1019 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 NIPAL4Q0D2K0 466 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 C1QTNF12Q5T7M4 302 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 TXNDC8Q6A555 127 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 IFT43Q96FT9 208 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 ABCF3Q9NUQ8 709 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 COMMD8Q9NX08 183 aa10.08□□□□□ -0.8
VTA1-205ENST00000620996 PPARGC1AQ9UBK2 798 aaKnown RBP10.08□□□□□ -0.8
VTA1-205ENST00000620996 MICAL3Q7RTP6 2002 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 TANC1Q9C0D5 1861 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 FGF18O76093 207 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 USP1O94782 785 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 RHOCP08134 193 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 ZDHHC11BP0C7U3 371 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 GJA1P17302 382 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 AVPR1AP37288 418 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 CYP4F8P98187 520 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 NRG1Q02297 640 aaPredicted RBP10.07□□□□□ -0.8
VTA1-205ENST00000620996 RING1Q06587 406 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 ZNF33AQ06730 810 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 THOC5Q13769 683 aaKnown RBP10.07□□□□□ -0.8
VTA1-205ENST00000620996 TPGS2Q68CL5 300 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 PIGWQ7Z7B1 504 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 ZNF683Q8IZ20 524 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 CARNMT1Q8N4J0 409 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 FIBCD1Q8N539 461 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 ARL14EPQ8N8R7 260 aaPredicted RBP10.07□□□□□ -0.8
VTA1-205ENST00000620996 SEMA3CQ99985 751 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 HERC2P3Q9BVR0 1158 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 TTLL2Q9BWV7 592 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 SSU72Q9NP77 194 aaKnown RBP10.07□□□□□ -0.8
VTA1-205ENST00000620996 UXTQ9UBK9 157 aaPredicted RBP10.07□□□□□ -0.8
VTA1-205ENST00000620996 SLC2A6Q9UGQ3 507 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 SOX13Q9UN79 622 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 INSL5Q9Y5Q6 135 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.07□□□□□ -0.8
VTA1-205ENST00000620996 CCT8L1PA6NM43 557 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 CCL22O00626 93 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 BUD23O43709 281 aaKnown RBP10.07□□□□□ -0.8
VTA1-205ENST00000620996 ALDH1A2O94788 518 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 CKMP06732 381 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 PIRTP0C851 137 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 SGSHP51688 502 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 NEK3P51956 506 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 SLC18A2Q05940 514 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 ZNF177Q13360 481 aaPredicted RBP10.07□□□□□ -0.8
VTA1-205ENST00000620996 MPP3Q13368 585 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 HNRNPDQ14103 355 aaKnown RBP10.07□□□□□ -0.8
VTA1-205ENST00000620996 LBRQ14739 615 aaKnown RBP10.07□□□□□ -0.8
VTA1-205ENST00000620996 PCID2Q5JVF3 399 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 ESRP1Q6NXG1 681 aaKnown RBP10.07□□□□□ -0.8
VTA1-205ENST00000620996 NUDCD3Q8IVD9 361 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 CMTR2Q8IYT2 770 aaKnown RBP10.07□□□□□ -0.8
VTA1-205ENST00000620996 KLHL23Q8NBE8 558 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 PTPRN2Q92932 1015 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 WBP2Q969T9 261 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 MRGPRX2Q96LB1 330 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 SLC25A51Q9H1U9 297 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 ATP13A1Q9HD20 1204 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 ENTPD7Q9NQZ7 604 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 SLC39A10Q9ULF5 831 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 ARL2BPQ9Y2Y0 163 aa10.07□□□□□ -0.8
VTA1-205ENST00000620996 A0A0G2JND7 137 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 FAM237BA0A1B0GVD1 139 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 HMX2A2RU54 273 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 WASH4PA8MWX3 477 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 STC2O76061 302 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 ABLIM3O94929 683 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 LRG1P02750 347 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 KITP10721 976 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 ALADP13716 330 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 GLDCP23378 1020 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 SPRP35270 261 aaPredicted RBP10.06□□□□□ -0.8
VTA1-205ENST00000620996 PGGT1BP53609 377 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 OXCT1P55809 520 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 CTBP1Q13363 440 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 ITIH4Q14624 930 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 CHI3L2Q15782 390 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 CNGA3Q16281 694 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 PARP15Q460N3 678 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 N4BP2L1Q5TBK1 243 aaPredicted RBP10.06□□□□□ -0.8
VTA1-205ENST00000620996 ZCCHC23Q6ZST2 131 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 TRPM8Q7Z2W7 1104 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 DDX53Q86TM3 631 aaKnown RBP10.06□□□□□ -0.8
VTA1-205ENST00000620996 LRRC49Q8IUZ0 686 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 DCLK2Q8N568 766 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 PDCD6IPQ8WUM4 868 aaKnown RBP10.06□□□□□ -0.8
VTA1-205ENST00000620996 ZNF689Q96CS4 500 aaPredicted RBP10.06□□□□□ -0.8
VTA1-205ENST00000620996 CPNE1Q99829 537 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 TSSK1BQ9BXA7 367 aa10.06□□□□□ -0.8
VTA1-205ENST00000620996 FNDC3AQ9Y2H6 1198 aaKnown RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms