RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 HNRNPKP61978 463 aaKnown RBP eCLIP12.15□□□□□ -0.46
UPF3B-204ENST00000619445 DAB2P98082 770 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 ATP11AP98196 1134 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 RAD51Q06609 339 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 BNIP3Q12983 259 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 DNAJC3Q13217 504 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 RTP5Q14D33 572 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 TMEM259Q4ZIN3 620 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 HSP90AA4PQ58FG1 418 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 HES3Q5TGS1 186 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 PPP1R2P3Q6NXS1 205 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 LINGO4Q6UY18 593 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 CLEC17AQ6ZS10 378 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 ABI3BPQ7Z7G0 1075 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 PDZD3Q86UT5 571 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 OR7D4Q8NG98 312 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 CASKIN2Q8WXE0 1202 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 ASB12Q8WXK4 309 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 NTAN1Q96AB6 310 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 ARRDC3Q96B67 414 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 SLC17A9Q9BYT1 436 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 ANLNQ9NQW6 1124 aa12.15□□□□□ -0.46
UPF3B-204ENST00000619445 METTL5Q9NRN9 209 aaKnown RBP12.15□□□□□ -0.46
UPF3B-204ENST00000619445 NOCTQ9UK39 431 aaKnown RBP12.15□□□□□ -0.46
UPF3B-204ENST00000619445 LAMA5O15230 3695 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 MYLKQ15746 1914 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 RRP8O43159 456 aaKnown RBP12.14□□□□□ -0.47
UPF3B-204ENST00000619445 RAMP2O60895 175 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 GFPT2O94808 682 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 GSRP00390 522 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 GP1BAP07359 652 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 KRT3P12035 628 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 PRLRP16471 622 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 DGKAP23743 735 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 RABIFP47224 123 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 DNA2P51530 1060 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 CCNHP51946 323 aaPredicted RBP12.14□□□□□ -0.47
UPF3B-204ENST00000619445 AIF1P55008 147 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 POLR2FP61218 127 aaKnown RBP12.14□□□□□ -0.47
UPF3B-204ENST00000619445 SNRPD1P62314 119 aaKnown RBP12.14□□□□□ -0.47
UPF3B-204ENST00000619445 SGCGQ13326 291 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 COL28A1Q2UY09 1125 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 PROX2Q3B8N5 592 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 CDKAL1Q5VV42 579 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 RWDD4Q6NW29 188 aaKnown RBP12.14□□□□□ -0.47
UPF3B-204ENST00000619445 KYAT3Q6YP21 454 aaKnown RBP12.14□□□□□ -0.47
UPF3B-204ENST00000619445 LRRC69Q6ZNQ3 347 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 DRC7Q8IY82 874 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 CHST14Q8NCH0 376 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 DENND6BQ8NEG7 585 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 RXFP2Q8WXD0 754 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 BAP1Q92560 729 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 CENPIQ92674 756 aaPredicted RBP12.14□□□□□ -0.47
UPF3B-204ENST00000619445 TBC1D31Q96DN5 1066 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 LENG8Q96PV6 779 aaPredicted RBP12.14□□□□□ -0.47
UPF3B-204ENST00000619445 C1QTNF7Q9BXJ2 289 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 CALN1Q9BXU9 219 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 GANQ9H2C0 597 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 TNKS2Q9H2K2 1166 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 TMEM248Q9NWD8 314 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 TAB2Q9NYJ8 693 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 NLGN3Q9NZ94 848 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 RALYQ9UKM9 306 aaKnown RBP12.14□□□□□ -0.47
UPF3B-204ENST00000619445 CLCA2Q9UQC9 943 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 AK5Q9Y6K8 562 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 WASF2Q9Y6W5 498 aa12.14□□□□□ -0.47
UPF3B-204ENST00000619445 C2CD4BA6NLJ0 364 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 NEMP1O14524 444 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 TOR1BO14657 336 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 FPGTO14772 594 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 SIGLEC6O43699 453 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 PIAS2O75928 621 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 POP4O95707 220 aaKnown RBP12.13□□□□□ -0.47
UPF3B-204ENST00000619445 CKMT1AP12532 417 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 ABCG1P45844 678 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 SUOXP51687 545 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 JAM2P57087 298 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 ARF5P84085 180 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 FMO1Q01740 532 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 TARDBPQ13148 414 aaKnown RBP eCLIP12.13□□□□□ -0.47
UPF3B-204ENST00000619445 KRT31Q15323 416 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 CDO1Q16878 200 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 ZNF805Q5CZA5 627 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 MANEALQ5VSG8 457 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 C19orf48Q6RUI8 117 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 DCBLD1Q8N8Z6 715 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 FAM181AQ8N9Y4 354 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 NEK11Q8NG66 645 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 OR13H1Q8NG92 308 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 OR2AP1Q8NGE2 309 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 VPS16Q9H269 839 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 FAM207AQ9NSI2 230 aaPredicted RBP12.13□□□□□ -0.47
UPF3B-204ENST00000619445 ADAM22Q9P0K1 906 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 FADS3Q9Y5Q0 445 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 SNX10Q9Y5X0 201 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 CSNK1G3Q9Y6M4 447 aa12.13□□□□□ -0.47
UPF3B-204ENST00000619445 PTPRQQ9UMZ3 2332 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 GOLGA6L22H0YM25 854 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 SCAMP1O15126 338 aa12.12□□□□□ -0.47
UPF3B-204ENST00000619445 ZNF821O75541 412 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms