RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 BFARQ9NZS9 450 aa14.71□□□□□ -0.06
SHROOM1-208ENST00000617339 A0A1W2PQH9 124 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 NEMP1O14524 444 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 MAGEC1O60732 1142 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 SLC10A3P09131 477 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 RAG1P15918 1043 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 SLC5A3P53794 718 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 CTXN3Q4LDR2 81 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 FBXL19Q6PCT2 694 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 RNF111Q6ZNA4 994 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 CFAP52Q8N1V2 620 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 CDKL2Q92772 493 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 CASP10Q92851 521 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 APOPT1Q96IL0 206 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 ZNF512Q96ME7 567 aaPredicted RBP14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 C20orf27Q9GZN8 174 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 DPYSL4O14531 572 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 PENKP01210 267 aaPredicted RBP14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 NCF2P19878 526 aaPredicted RBP14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 PTPN3P26045 913 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 DBF4BQ8NFT6 615 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 HSPBAP1Q96EW2 488 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 QKIQ96PU8 341 aaKnown RBP eCLIP14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 CYP2S1Q96SQ9 504 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 NMUR1Q9HB89 426 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 GOLGA8QA0A0J9YX86 632 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 GOLGA8OA6NCC3 632 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 E7ESA3 106 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 GOLGA8NF8WBI6 632 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 TM9SF1O15321 606 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 COQ9O75208 318 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 CLPTM1O96005 669 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 PMLP29590 882 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 CHN2P52757 468 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 FOLH1Q04609 750 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 ZNF280DQ6N043 979 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 KLHDC10Q6PID8 442 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 RELL1Q8IUW5 271 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 ICA1LQ8NDH6 482 aa14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 FCRL2Q96LA5 508 aaPredicted RBP14.7□□□□□ -0.06
SHROOM1-208ENST00000617339 F8W8V4 182 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 PAGE1O75459 146 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 DAB1O75553 588 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 STAU1O95793 577 aaKnown RBP14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 CCR10P46092 362 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 GK3PQ14409 553 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 NADK2Q4G0N4 442 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 SPDYAQ5MJ70 313 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 C14orf80Q86SX3 495 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 OMDQ99983 421 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 SUDS3Q9H7L9 328 aaPredicted RBP14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 LIN28AQ9H9Z2 209 aaKnown RBP14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 TRPC7Q9HCX4 862 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 CREBZFQ9NS37 354 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 ITM2AO43736 263 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 GCATO75600 419 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 VAPBO95292 243 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 PROCP04070 461 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 MSX2P35548 267 aaPredicted RBP14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 ACLYP53396 1101 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 IRF9Q00978 393 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 ITGA9Q13797 1035 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 TRIM67Q6ZTA4 783 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 RYBPQ8N488 228 aaPredicted RBP14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 EXT2Q93063 718 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 RTP3Q9BQQ7 232 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 WDR6Q9NNW5 1121 aaKnown RBP14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 ANK1P16157 1881 aa14.69□□□□□ -0.06
SHROOM1-208ENST00000617339 RFPL1O75677 317 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 SLC18A1P54219 525 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 FASTKD1Q53R41 847 aaKnown RBP14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 B3GNT6Q6ZMB0 384 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 SERINC5Q86VE9 423 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 CENPIQ92674 756 aaPredicted RBP14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 FRMD8P1Q9BZ68 369 aaPredicted RBP14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 SMPD4Q9NXE4 827 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 ZNF232Q9UNY5 417 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 BOLA2-SMG1P6H3BVE0 249 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 GJB3O75712 270 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 POLBP06746 335 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 NELFEP18615 380 aaKnown RBP14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 NMBRP28336 390 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 NR2C2P49116 596 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 PSMD5Q16401 504 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 HSF5Q4G112 596 aaPredicted RBP14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 DNAL1Q4LDG9 190 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 DUS1LQ6P1R4 473 aaKnown RBP14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 GALNT4Q8N4A0 578 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 RSPH1Q8WYR4 309 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 DGCR14Q96DF8 476 aaKnown RBP14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 PRPF18Q99633 342 aaKnown RBP14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 RBM22Q9NW64 420 aaKnown RBP eCLIP14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 FBXW11Q9UKB1 542 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 PLA2G4CQ9UP65 541 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 PLXNA1Q9UIW2 1896 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 HMX2A2RU54 273 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 ZNF189O75820 626 aaPredicted RBP14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 MT-CO1P00395 513 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 CYBAP13498 195 aa14.68□□□□□ -0.06
SHROOM1-208ENST00000617339 C10orf120Q5SQS8 335 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms