RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 SPATS2Q86XZ4 545 aaKnown RBP16.11■□□□□ 0.17
VRK3-221ENST00000600284 MCOLN2Q8IZK6 566 aa16.11■□□□□ 0.17
VRK3-221ENST00000600284 CCDC185Q8N715 623 aa16.11■□□□□ 0.17
VRK3-221ENST00000600284 TMEM145Q8NBT3 493 aa16.11■□□□□ 0.17
VRK3-221ENST00000600284 GRIN3AQ8TCU5 1115 aa16.11■□□□□ 0.17
VRK3-221ENST00000600284 KLHDC7BQ96G42 594 aa16.11■□□□□ 0.17
VRK3-221ENST00000600284 RTN4Q9NQC3 1192 aaKnown RBP16.11■□□□□ 0.17
VRK3-221ENST00000600284 NDFIP2Q9NV92 336 aa16.11■□□□□ 0.17
VRK3-221ENST00000600284 TMEM63CQ9P1W3 806 aa16.11■□□□□ 0.17
VRK3-221ENST00000600284 DNAI1Q9UI46 699 aa16.11■□□□□ 0.17
VRK3-221ENST00000600284 NEU3Q9UQ49 428 aa16.11■□□□□ 0.17
VRK3-221ENST00000600284 PCDHGA1Q9Y5H4 931 aa16.11■□□□□ 0.17
VRK3-221ENST00000600284 ASPMQ8IZT6 3477 aa16.11■□□□□ 0.17
VRK3-221ENST00000600284 ZSCAN5CA6NGD5 496 aaPredicted RBP16.1■□□□□ 0.17
VRK3-221ENST00000600284 RAMP2O60895 175 aa16.1■□□□□ 0.17
VRK3-221ENST00000600284 LDOC1O95751 146 aaPredicted RBP16.1■□□□□ 0.17
VRK3-221ENST00000600284 C1SP09871 688 aa16.1■□□□□ 0.17
VRK3-221ENST00000600284 AKT2P31751 481 aa16.1■□□□□ 0.17
VRK3-221ENST00000600284 ACVRL1P37023 503 aa16.1■□□□□ 0.17
VRK3-221ENST00000600284 DNA2P51530 1060 aa16.1■□□□□ 0.17
VRK3-221ENST00000600284 CCNHP51946 323 aaPredicted RBP16.1■□□□□ 0.17
VRK3-221ENST00000600284 POLD3Q15054 466 aaPredicted RBP16.1■□□□□ 0.17
VRK3-221ENST00000600284 ZNF284Q2VY69 593 aa16.1■□□□□ 0.17
VRK3-221ENST00000600284 ANO6Q4KMQ2 910 aa16.1■□□□□ 0.17
VRK3-221ENST00000600284 EFHC2Q5JST6 749 aa16.1■□□□□ 0.17
VRK3-221ENST00000600284 PPP1R15BQ5SWA1 713 aa16.1■□□□□ 0.17
VRK3-221ENST00000600284 GATAD2AQ86YP4 633 aa16.1■□□□□ 0.17
VRK3-221ENST00000600284 CNPY3Q9BT09 278 aa16.1■□□□□ 0.17
VRK3-221ENST00000600284 FCF1Q9Y324 198 aaKnown RBP16.1■□□□□ 0.17
VRK3-221ENST00000600284 COL5A1P20908 1838 aaPredicted RBP16.1■□□□□ 0.17
VRK3-221ENST00000600284 SRRM3A6NNA2 597 aaPredicted RBP16.09■□□□□ 0.17
VRK3-221ENST00000600284 SLC31A1O15431 190 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 TEX33O43247 280 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 CCP110O43303 1012 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 KDELR3O43731 214 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 AP1G1O43747 822 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 PCDH8O95206 1070 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 GSRP00390 522 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 ADRB3P13945 408 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 TNFAIP3P21580 790 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 HNRNPA2B1P22626 353 aaKnown RBP16.09■□□□□ 0.17
VRK3-221ENST00000600284 HTR7P34969 479 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 SNRPD1P62314 119 aaKnown RBP16.09■□□□□ 0.17
VRK3-221ENST00000600284 SMAD1Q15797 465 aaKnown RBP16.09■□□□□ 0.17
VRK3-221ENST00000600284 FILIP1LQ4L180 1135 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 TMEM259Q4ZIN3 620 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 SFMBT2Q5VUG0 894 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 KIAA1161Q6NSJ0 714 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 SCYL2Q6P3W7 929 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 FBXL19Q6PCT2 694 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 DCUN1D2Q6PH85 259 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 DCP2Q8IU60 420 aaKnown RBP16.09■□□□□ 0.17
VRK3-221ENST00000600284 CASKIN2Q8WXE0 1202 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 BAP1Q92560 729 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 RAB7BQ96AH8 199 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 FEM1CQ96JP0 617 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 MCEEQ96PE7 176 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 SYT11Q9BT88 431 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 MAGEB5Q9BZ81 275 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 DONSONQ9NYP3 566 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 HECAQ9UBI9 543 aaPredicted RBP16.09■□□□□ 0.17
VRK3-221ENST00000600284 FZD10Q9ULW2 581 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 ZFR2Q9UPR6 939 aaKnown RBP16.09■□□□□ 0.17
VRK3-221ENST00000600284 HS3ST3A1Q9Y663 406 aa16.09■□□□□ 0.17
VRK3-221ENST00000600284 A0A1W2PQC6 194 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 GOLGA8CPA6NN73 597 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 WASH4PA8MWX3 477 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 RNF103O00237 685 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 ENC1O14682 589 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 POP4O95707 220 aaKnown RBP16.08■□□□□ 0.16
VRK3-221ENST00000600284 THEGLP0DJG4 465 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 EPHB2P29323 1055 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 YBEYP58557 167 aaPredicted RBP16.08■□□□□ 0.16
VRK3-221ENST00000600284 RPL7AP62424 266 aaKnown RBP16.08■□□□□ 0.16
VRK3-221ENST00000600284 RPS21P63220 83 aaKnown RBP16.08■□□□□ 0.16
VRK3-221ENST00000600284 BNIP3Q12983 259 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 INO80DQ53TQ3 878 aaPredicted RBP16.08■□□□□ 0.16
VRK3-221ENST00000600284 KANSL1Q7Z3B3 1105 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 EID2Q8N6I1 236 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 RTL3Q8N8U3 475 aaKnown RBP16.08■□□□□ 0.16
VRK3-221ENST00000600284 OR2AP1Q8NGE2 309 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 IFT43Q96FT9 208 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 CNDP2Q96KP4 475 aaKnown RBP16.08■□□□□ 0.16
VRK3-221ENST00000600284 EPAS1Q99814 870 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 CATSPERBQ9H7T0 1116 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 KLHL11Q9NVR0 708 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 FADS3Q9Y5Q0 445 aa16.08■□□□□ 0.16
VRK3-221ENST00000600284 AKAP13Q12802 2813 aa16.07■□□□□ 0.16
VRK3-221ENST00000600284 EIF3CLB5ME19 914 aaKnown RBP16.07■□□□□ 0.16
VRK3-221ENST00000600284 TSPAN6O43657 245 aa16.07■□□□□ 0.16
VRK3-221ENST00000600284 MYLK3Q32MK0 819 aa16.07■□□□□ 0.16
VRK3-221ENST00000600284 ZNF805Q5CZA5 627 aa16.07■□□□□ 0.16
VRK3-221ENST00000600284 ABI3BPQ7Z7G0 1075 aa16.07■□□□□ 0.16
VRK3-221ENST00000600284 TMPRSS12Q86WS5 348 aa16.07■□□□□ 0.16
VRK3-221ENST00000600284 PROSER1Q86XN7 944 aa16.07■□□□□ 0.16
VRK3-221ENST00000600284 PYROXD2Q8N2H3 581 aa16.07■□□□□ 0.16
VRK3-221ENST00000600284 ASB12Q8WXK4 309 aa16.07■□□□□ 0.16
VRK3-221ENST00000600284 TSC1Q92574 1164 aa16.07■□□□□ 0.16
VRK3-221ENST00000600284 KLK6Q92876 244 aa16.07■□□□□ 0.16
VRK3-221ENST00000600284 EIF3CQ99613 913 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms