RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 PIGVQ9NUD9 493 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 SLC12A6Q9UHW9 1150 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 GGT7Q9UJ14 662 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 CNTN6Q9UQ52 1028 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 DMTF1Q9Y222 760 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 ITM2BQ9Y287 266 aa8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 RP1L1Q8IWN7 2480 aaPredicted RBP8.85□□□□□ -0.99
SHKBP1-220ENST00000599716 K7ESM1 405 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 M0QYT0 321 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 SCAMP1O15126 338 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 PMM2O15305 246 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 SPINT1O43278 529 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 LEFTY1O75610 366 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 PAK4O96013 591 aaPredicted RBP8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 CDK4P11802 303 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 CKMT1AP12532 417 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 CR2P20023 1033 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 HNRNPA2B1P22626 353 aaKnown RBP8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 AKT2P31751 481 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 DNA2P51530 1060 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 SULT2A1Q06520 285 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 C1orf61Q13536 156 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 SLC12A1Q13621 1099 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 UBAP2LQ14157 1087 aaKnown RBP8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 FZD2Q14332 565 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 PTPN20Q4JDL3 420 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 RAB6CQ53S08 254 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 OLFML1Q6UWY5 402 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 LEKR1Q6ZMV7 388 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 DPY19L3Q6ZPD9 716 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 NYAP1Q6ZVC0 841 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 HORMAD1Q86X24 394 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 RBFAQ8N0V3 343 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 IFI44Q8TCB0 444 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 MAPK15Q8TD08 544 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 ATXN7L3BQ96GX2 97 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 DHTKD1Q96HY7 919 aaPredicted RBP8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 VCPIP1Q96JH7 1222 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 PPP1R13BQ96KQ4 1090 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 MED15Q96RN5 788 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 SPON2Q9BUD6 331 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 TKTL2Q9H0I9 626 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 RAB6CQ9H0N0 254 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 KDM4CQ9H3R0 1056 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 PREBQ9HCU5 417 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 ASCL3Q9NQ33 180 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 KLHL11Q9NVR0 708 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 PNMA8BQ9ULN7 279 aaPredicted RBP8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 SATB2Q9UPW6 733 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 FCF1Q9Y324 198 aaKnown RBP8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 HEMK1Q9Y5R4 338 aaPredicted RBP8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 ICE1Q9Y2F5 2266 aa8.84□□□□□ -0.99
SHKBP1-220ENST00000599716 GOLGA6L4A6NEF3 574 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 P4HA2O15460 535 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 MED7O43513 233 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 MAGEC1O60732 1142 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 GADD45BO75293 160 aaPredicted RBP8.83□□□□□ -1
SHKBP1-220ENST00000599716 ZNF821O75541 412 aaPredicted RBP8.83□□□□□ -1
SHKBP1-220ENST00000599716 DAB1O75553 588 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 ABL2P42684 1182 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 SULT1E1P49888 294 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 PCBP4P57723 403 aaKnown RBP8.83□□□□□ -1
SHKBP1-220ENST00000599716 E2F1Q01094 437 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 CETN1Q12798 172 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 OVGP1Q12889 678 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 SRSF6Q13247 344 aaKnown RBP8.83□□□□□ -1
SHKBP1-220ENST00000599716 STIM1Q13586 685 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 HS1BP3Q53T59 392 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 PERM1Q5SV97 790 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 ARTNQ5T4W7 220 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 TTC39BQ5VTQ0 682 aaPredicted RBP8.83□□□□□ -1
SHKBP1-220ENST00000599716 TRNP1Q6NT89 227 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 C22orf39Q6P5X5 142 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 ERN2Q76MJ5 926 aaKnown RBP8.83□□□□□ -1
SHKBP1-220ENST00000599716 PARS2Q7L3T8 475 aaKnown RBP8.83□□□□□ -1
SHKBP1-220ENST00000599716 BEND5Q7L4P6 421 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 EFL1Q7Z2Z2 1120 aaKnown RBP8.83□□□□□ -1
SHKBP1-220ENST00000599716 PHLDB2Q86SQ0 1253 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 ZNF683Q8IZ20 524 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.83□□□□□ -1
SHKBP1-220ENST00000599716 ZNF248Q8NDW4 579 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 ZNF548Q8NEK5 533 aaPredicted RBP8.83□□□□□ -1
SHKBP1-220ENST00000599716 LMX1AQ8TE12 382 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 STK32AQ8WU08 396 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 KCNE4Q8WWG9 221 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 CCDC34Q96HJ3 373 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 DEPDC7Q96QD5 511 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 MAGEB5Q9BZ81 275 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 TM6SF2Q9BZW4 377 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 ABCG4Q9H172 646 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 SYNDIG1Q9H7V2 258 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 IL36AQ9UHA7 158 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 HS3ST2Q9Y278 367 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 TBC1D30Q9Y2I9 924 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 WASF2Q9Y6W5 498 aa8.83□□□□□ -1
SHKBP1-220ENST00000599716 IGLON5A6NGN9 336 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 MUSKO15146 869 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 ALOX15BO15296 676 aa8.82□□□□□ -1
SHKBP1-220ENST00000599716 HSF2BPO75031 334 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms