RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TGDSO95455 350 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 MYL2P10916 166 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 FGF3P11487 239 aaPredicted RBP14.68□□□□□ -0.06
VRK3-217ENST00000599538 TACR2P21452 398 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 OR1E1P30953 314 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 ARRB2P32121 409 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 ARCN1P48444 511 aaKnown RBP14.68□□□□□ -0.06
VRK3-217ENST00000599538 ARFIP2P53365 341 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 RING1Q06587 406 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 SMARCB1Q12824 385 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 CTC1Q2NKJ3 1217 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 ANO4Q32M45 955 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 MARC1Q5VT66 337 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 MBLAC2Q68D91 279 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 LRRC49Q8IUZ0 686 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 C10orf107Q8IVU9 208 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 ARID3BQ8IVW6 561 aaPredicted RBP14.68□□□□□ -0.06
VRK3-217ENST00000599538 TNS4Q8IZW8 715 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 ZNF398Q8TD17 642 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 ISL2Q96A47 359 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 IMP4Q96G21 291 aaKnown RBP14.68□□□□□ -0.06
VRK3-217ENST00000599538 SLC25A51Q9H1U9 297 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 SP110Q9HB58 689 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 ENTPD7Q9NQZ7 604 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 KLC4Q9NSK0 619 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 DCDC2Q9UHG0 476 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 A0A0D9SEW6 157 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 MUSKO15146 869 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 IL1BP01584 269 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 AHSGP02765 367 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 KRT16P08779 473 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 NQO1P15559 274 aaKnown RBP14.67□□□□□ -0.06
VRK3-217ENST00000599538 HMGA1P17096 107 aaKnown RBP14.67□□□□□ -0.06
VRK3-217ENST00000599538 SERPINB3P29508 390 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 RENBPP51606 427 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 MPP1Q00013 466 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 POLD3Q15054 466 aaPredicted RBP14.67□□□□□ -0.06
VRK3-217ENST00000599538 CLNKQ7Z7G1 428 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 TTC7BQ86TV6 843 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 ZC3HC1Q86WB0 502 aaKnown RBP14.67□□□□□ -0.06
VRK3-217ENST00000599538 LGI2Q8N0V4 545 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 C2orf15Q8WU43 125 aaKnown RBP14.67□□□□□ -0.06
VRK3-217ENST00000599538 WBP2Q969T9 261 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 ZNF512Q96ME7 567 aaPredicted RBP14.67□□□□□ -0.06
VRK3-217ENST00000599538 C7orf26Q96N11 449 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 GKN1Q9NS71 199 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 SAGE1Q9NXZ1 904 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 FNIP2Q9P278 1114 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 TCAF1Q9Y4C2 921 aa14.67□□□□□ -0.06
VRK3-217ENST00000599538 A0A096LPK6 155 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 BIRC5O15392 142 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 RAMP2O60895 175 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 C2P06681 752 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 SAT1P21673 171 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 SERINC3Q13530 473 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 SEPT6Q14141 434 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 STXBP5Q5T5C0 1151 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 ATG16L1Q676U5 607 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 PDPK2PQ6A1A2 396 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 KIAA1841Q6NSI8 718 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 MFSD6LQ8IWD5 586 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 ARHGEF3Q9NR81 526 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 ZFP69BQ9UJL9 534 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 SLC39A10Q9ULF5 831 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 ZNF840PA6NDX5 716 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 AURKAO14965 403 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 COCHO43405 550 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 KLKB1P03952 638 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 ATP5C1P36542 298 aaKnown RBP14.66□□□□□ -0.06
VRK3-217ENST00000599538 SERPINB8P50452 374 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 SGSHP51688 502 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 STX3Q13277 289 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 MSLNQ13421 630 aaPredicted RBP14.66□□□□□ -0.06
VRK3-217ENST00000599538 ALYREFQ86V81 257 aaKnown RBP14.66□□□□□ -0.06
VRK3-217ENST00000599538 TEX26Q8N6G2 289 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 ARRDC2Q8TBH0 407 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 AUTS2Q8WXX7 1259 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 UTP4Q969X6 686 aaKnown RBP14.66□□□□□ -0.06
VRK3-217ENST00000599538 SKA1Q96BD8 255 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 SLC7A6OSQ96CW6 309 aaPredicted RBP14.66□□□□□ -0.06
VRK3-217ENST00000599538 TREX1Q9NSU2 369 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 COPG2Q9UBF2 871 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 ATP11BQ9Y2G3 1177 aa14.66□□□□□ -0.06
VRK3-217ENST00000599538 A8MUI8 341 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 AP3B1O00203 1094 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 PHGDHO43175 533 aaKnown RBP14.65□□□□□ -0.06
VRK3-217ENST00000599538 DNAJB2P25686 324 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 ITGB8P26012 769 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 AVPR1AP37288 418 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 CSE1LP55060 971 aaKnown RBP14.65□□□□□ -0.06
VRK3-217ENST00000599538 RPS24P62847 133 aaKnown RBP14.65□□□□□ -0.06
VRK3-217ENST00000599538 DEFB103AP81534 67 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 IKBKEQ14164 716 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 ZNF460Q14592 562 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 SPOUT1Q5T280 376 aaKnown RBP14.65□□□□□ -0.06
VRK3-217ENST00000599538 POTEHQ6S545 545 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 CLEC14AQ86T13 490 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 TRIM42Q8IWZ5 723 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 PPHLN1Q8NEY8 458 aaKnown RBP14.65□□□□□ -0.06
VRK3-217ENST00000599538 MOCOSQ96EN8 888 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms