RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SLC39A8Q9C0K1 460 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 RETREG1Q9H6L5 497 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 CATSPERBQ9H7T0 1116 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 SPHK2Q9NRA0 654 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 DUS2Q9NX74 493 aaKnown RBP9.66□□□□□ -0.86
TRIM28-208ENST00000597172 DTLQ9NZJ0 730 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 EVLQ9UI08 416 aaPredicted RBP9.66□□□□□ -0.86
TRIM28-208ENST00000597172 ATMQ13315 3056 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 KNL1Q8NG31 2342 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 HELZP42694 1942 aaKnown RBP9.65□□□□□ -0.86
TRIM28-208ENST00000597172 OTOL1A6NHN0 477 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-208ENST00000597172 SPECC1L-ADORA2AF8WAN1 911 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 ARNTLO00327 626 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 SLC9A3R1O14745 358 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-208ENST00000597172 LIASO43766 372 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 MFSD11O43934 449 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 ATG13O75143 517 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 CLDN11O75508 207 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 MAP3K6O95382 1288 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 PENKP01210 267 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-208ENST00000597172 ARSAP15289 507 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 HOXD9P28356 352 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-208ENST00000597172 KCNJ1P48048 391 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 NR2C2P49116 596 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 NOMO1Q15155 1222 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 PON2Q15165 354 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 DHCR24Q15392 516 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 KCTD19Q17RG1 926 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-208ENST00000597172 GAB4Q2WGN9 574 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 MPPE1Q53F39 396 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 TRIM61Q5EBN2 209 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 FSCBQ5H9T9 825 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 COLEC12Q5KU26 742 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 RABGAP1LQ5R372 815 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 LY6G5CQ5SRR4 150 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 MPP7Q5T2T1 576 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 TTC27Q6P3X3 843 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 TMCO3Q6UWJ1 677 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 B4GALNT4Q76KP1 1039 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 CHST9Q7L1S5 443 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 RALGPS2Q86X27 583 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-208ENST00000597172 UMODL1-AS1Q8N2C9 162 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 CCDC33Q8N5R6 958 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 LZTR1Q8N653 840 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 HJURPQ8NCD3 748 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-208ENST00000597172 SLC35B2Q8TB61 432 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 WFDC5Q8TCV5 224 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 DDI1Q8WTU0 396 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 PIGKQ92643 395 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 P3H4Q92791 437 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 BHMTQ93088 406 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 LMLNQ96KR4 655 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 OLFM3Q96PB7 478 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 DCBLD2Q96PD2 775 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 LRRC19Q9H756 370 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 C10orf88Q9H8K7 445 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 HPS4Q9NQG7 708 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 PLK2Q9NYY3 685 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 DNPEPQ9ULA0 475 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 TBC1D30Q9Y2I9 924 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 HEY1Q9Y5J3 304 aa9.65□□□□□ -0.86
TRIM28-208ENST00000597172 PTPRBP23467 1997 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 NBPF19A0A087WUL8 3843 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 NUP210Q8TEM1 1887 aaPredicted RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 A0A1B0GVM2 712 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 TCAF2A6NFQ2 919 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 RIOK3O14730 519 aaKnown RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 LUC7L3O95232 432 aaKnown RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 CYP17A1P05093 508 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 FTH1P19P0C7X4 201 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 ENGP17813 658 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 ITPKBP27987 946 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 OR1E1P30953 314 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 CTHP32929 405 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 COILP38432 576 aaPredicted RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 MAPKAPK2P49137 400 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 EIF3EP60228 445 aaKnown RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 CKAP4Q07065 602 aaKnown RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 TNK2Q07912 1038 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 C2orf54Q08AI8 447 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 GALNT2Q10471 571 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 ZNF177Q13360 481 aaPredicted RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 SNX1Q13596 522 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 OASLQ15646 514 aaKnown RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 TRIP6Q15654 476 aaKnown RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 FAM182AQ5T1J6 154 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 TTC39BQ5VTQ0 682 aaPredicted RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 PMS2CLQ68D20 193 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 CXorf57Q6NSI4 855 aaKnown RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 DRICH1Q6PGQ1 229 aaPredicted RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 ARHGAP36Q6ZRI8 547 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 CARNMT1Q8N4J0 409 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 CEP112Q8N8E3 955 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 TTC13Q8NBP0 860 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 NOA1Q8NC60 698 aaKnown RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 FIBINQ8TAL6 211 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 MAGOHBQ96A72 148 aaKnown RBP9.64□□□□□ -0.87
TRIM28-208ENST00000597172 ALG14Q96F25 216 aa9.64□□□□□ -0.87
TRIM28-208ENST00000597172 DDX47Q9H0S4 455 aaKnown RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms