RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 ZMIZ2Q8NF64 920 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 FBRSQ9HAH7 460 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 CYP3A43Q9HB55 503 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 PRSS16Q9NQE7 514 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 LCMT1Q9UIC8 334 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 PLA2G4CQ9UP65 541 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 NCKAP1Q9Y2A7 1128 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 ZNF510Q9Y2H8 683 aa13.19□□□□□ -0.3
SCAF1-202ENST00000595242 NOTCH2Q04721 2471 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 A0A1W2PR77 199 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 CCDC66A2RUB6 948 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 ATMINO43313 823 aaPredicted RBP13.18□□□□□ -0.3
SCAF1-202ENST00000595242 THAP12O43422 761 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 CYBBP04839 570 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 PAEPP09466 180 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 GP1BBP13224 206 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 RARGP13631 454 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 SLC1A1P43005 524 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 RXRGP48443 463 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 NFKB2Q00653 900 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 PPP2R5EQ16537 467 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 PROX2Q3B8N5 592 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 ZNF667Q5HYK9 610 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 NAA35Q5VZE5 725 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 PLEKHA7Q6IQ23 1121 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 NCEH1Q6PIU2 408 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 FUKQ8N0W3 1084 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 KRT222Q8N1A0 295 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 TTC39CQ8N584 583 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 EXD3Q8N9H8 876 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 GANCQ8TET4 914 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 AENQ8WTP8 325 aaKnown RBP13.18□□□□□ -0.3
SCAF1-202ENST00000595242 DDI1Q8WTU0 396 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 CYB5D2Q8WUJ1 264 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 ZNF606Q8WXB4 792 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 ALG3Q92685 438 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 CYFIP2Q96F07 1278 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 NAP1L3Q99457 506 aaPredicted RBP13.18□□□□□ -0.3
SCAF1-202ENST00000595242 SMOQ99835 787 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 SLC2A11Q9BYW1 496 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 VIPAS39Q9H9C1 493 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 ERVMER34-1Q9H9K5 563 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 POLR1BQ9H9Y6 1135 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 NMUR1Q9HB89 426 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 ASCL3Q9NQ33 180 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 THSD1Q9NS62 852 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 DMGDHQ9UI17 866 aaKnown RBP13.18□□□□□ -0.3
SCAF1-202ENST00000595242 SCML2Q9UQR0 700 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 PCDHA3Q9Y5H8 950 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 SCINQ9Y6U3 715 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 CREBBPQ92793 2442 aa13.18□□□□□ -0.3
SCAF1-202ENST00000595242 COL27A1Q8IZC6 1860 aaPredicted RBP13.17□□□□□ -0.3
SCAF1-202ENST00000595242 TCRBV5S1A1TA0A578 114 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 TLR4O00206 839 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 CALCAP01258 141 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 COMTP21964 271 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 MMP8P22894 467 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 MAN1A1P33908 653 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 DNA2P51530 1060 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 GSCP56915 257 aaPredicted RBP13.17□□□□□ -0.3
SCAF1-202ENST00000595242 MAP3K7CLP57077 242 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 NXPH1P58417 271 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 CDCP2Q5VXM1 449 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 CCDC81Q6ZN84 652 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 USP30Q70CQ3 517 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 HDXQ7Z353 690 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 OXR1Q8N573 874 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.17□□□□□ -0.3
SCAF1-202ENST00000595242 DEPDC7Q96QD5 511 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 MRPL47Q9HD33 250 aaKnown RBP13.17□□□□□ -0.3
SCAF1-202ENST00000595242 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.17□□□□□ -0.3
SCAF1-202ENST00000595242 RP1P56715 2156 aa13.17□□□□□ -0.3
SCAF1-202ENST00000595242 USP9YO00507 2555 aaPredicted RBP13.17□□□□□ -0.3
SCAF1-202ENST00000595242 NBASA2RRP1 2371 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 A0A1W2PQH9 124 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 TRIM38O00635 465 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 SUV39H1O43463 412 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 SIGLEC6O43699 453 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 CSO75390 466 aaKnown RBP13.16□□□□□ -0.3
SCAF1-202ENST00000595242 CALB1P05937 261 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 HMBSP08397 361 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 P4HA1P13674 534 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 RRM1P23921 792 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 CORO1AP31146 461 aaKnown RBP13.16□□□□□ -0.3
SCAF1-202ENST00000595242 DAB2P98082 770 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 INCA1Q0VD86 236 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 NNTQ13423 1086 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 MESDQ14696 234 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 ZNF776Q68DI1 518 aaPredicted RBP13.16□□□□□ -0.3
SCAF1-202ENST00000595242 GPRIN1Q7Z2K8 1008 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 DENND1CQ8IV53 801 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 TMEM35BQ8NCS4 154 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 CPA5Q8WXQ8 436 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 SERAC1Q96JX3 654 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 TNIP3Q96KP6 325 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 SDCBP2Q9H190 292 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 PABPC3Q9H361 631 aaKnown RBP13.16□□□□□ -0.3
SCAF1-202ENST00000595242 CSNK1G1Q9HCP0 422 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.16□□□□□ -0.3
SCAF1-202ENST00000595242 FBXL12Q9NXK8 326 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms