RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 A0A1W2PPC4 97 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 WASH4PA8MWX3 477 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 LRCH4O75427 683 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 GJB3O75712 270 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 RNF8O76064 485 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 PRNPP04156 253 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 FAM228BP0C875 321 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 CSRP1P21291 193 aaKnown RBP15.4■□□□□ 0.06
TRIM28-205ENST00000595028 MIPP30301 263 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 HNRNPH3P31942 346 aaKnown RBP15.4■□□□□ 0.06
TRIM28-205ENST00000595028 PPP2CBP62714 309 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 PPP2CAP67775 309 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 TRIM14Q14142 442 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 CA9Q16790 459 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 PIP5KL1Q5T9C9 394 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 SPECC1LQ69YQ0 1117 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 DPY19L3Q6ZPD9 716 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 CYP4V2Q6ZWL3 525 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-205ENST00000595028 TMIEQ8NEW7 156 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 GRIN3AQ8TCU5 1115 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 KDM4CQ9H3R0 1056 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 DHX35Q9H5Z1 703 aaKnown RBP15.4■□□□□ 0.06
TRIM28-205ENST00000595028 ARHGAP20Q9P2F6 1191 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 NENFQ9UMX5 172 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 ACTL7AQ9Y615 435 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 WASF2Q9Y6W5 498 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 DOCK9Q9BZ29 2069 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 MAST4O15021 2626 aa15.4■□□□□ 0.06
TRIM28-205ENST00000595028 BPTFQ12830 3046 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 A0A1B0GVT2 93 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 ZSCAN5CA6NGD5 496 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-205ENST00000595028 UPK3BL1B0FP48 263 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 UPK3BL2E5RIL1 263 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 EEF2KO00418 725 aaKnown RBP15.39■□□□□ 0.05
TRIM28-205ENST00000595028 KPNA3O00505 521 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-205ENST00000595028 PRPSAP2O60256 369 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 CER1O95813 267 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 CEACAM1P13688 526 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 CSNK1EP49674 416 aaKnown RBP15.39■□□□□ 0.05
TRIM28-205ENST00000595028 CCNHP51946 323 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-205ENST00000595028 YBEYP58557 167 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-205ENST00000595028 TEAD4Q15561 434 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 PARP15Q460N3 678 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 SOWAHCQ53LP3 525 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-205ENST00000595028 IL27RAQ6UWB1 636 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 LAYNQ6UX15 382 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 VSTM4Q8IW00 320 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 UMODL1-AS1Q8N2C9 162 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 ISG20Q96AZ6 181 aaKnown RBP15.39■□□□□ 0.05
TRIM28-205ENST00000595028 ARRDC3Q96B67 414 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 HMCESQ96FZ2 354 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 SLC6A18Q96N87 628 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 KCTD15Q96SI1 283 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-205ENST00000595028 DNAJC7Q99615 494 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 NCAPGQ9BPX3 1015 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 THAP2Q9H0W7 228 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 EBF2Q9HAK2 575 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 IL36AQ9UHA7 158 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 PCSK1NQ9UHG2 260 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 HPCAL4Q9UM19 191 aa15.39■□□□□ 0.05
TRIM28-205ENST00000595028 RASA4BC9J798 803 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 RNF103O00237 685 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 RASA4O43374 803 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 LATO43561 262 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 KDELR3O43731 214 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 GSRP00390 522 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 PCK1P35558 622 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 DNA2P51530 1060 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 RACK1P63244 317 aaKnown RBP15.38■□□□□ 0.05
TRIM28-205ENST00000595028 SLC14A1Q13336 389 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 KIF19Q2TAC6 998 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 CARD16Q5EG05 197 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 ERMARDQ5T6L9 678 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 ALKBH5Q6P6C2 394 aaKnown RBP15.38■□□□□ 0.05
TRIM28-205ENST00000595028 PIP4P1Q86T03 277 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 TRIM69Q86WT6 500 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 ZNF354CQ86Y25 554 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 PSTKQ8IV42 348 aaKnown RBP15.38■□□□□ 0.05
TRIM28-205ENST00000595028 DEFB124Q8NES8 71 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 PPP1R16AQ96I34 528 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 HEPHQ9BQS7 1158 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 TM6SF2Q9BZW4 377 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 PREBQ9HCU5 417 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 DYRK4Q9NR20 520 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 NEUROG3Q9Y4Z2 214 aa15.38■□□□□ 0.05
TRIM28-205ENST00000595028 TBC1D3DA0A087WVF3 549 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 TBC1D3IA0A087WXS9 549 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 TBC1D3EA0A087X179 549 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 TBC1D3KA0A087X1G2 549 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 TBC1D3FA6NER0 549 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-205ENST00000595028 TBC1D3LB9A6J9 549 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 HYAL3O43820 417 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-205ENST00000595028 LEFTY1O75610 366 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 TMCC1O94876 653 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 CYP1A2P05177 515 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 TBC1D3HP0C7X1 549 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 ZNF883P0CG24 379 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 CD59P13987 128 aa15.37■□□□□ 0.05
TRIM28-205ENST00000595028 EIF4A3P38919 411 aaKnown RBP15.37■□□□□ 0.05
TRIM28-205ENST00000595028 TAS2R38P59533 333 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms