RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 OR2A12Q8NGT7 310 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 PGAP3Q96FM1 320 aaPredicted RBP12.77□□□□□ -0.37
UPF1-203ENST00000594504 BBC3Q96PG8 261 aaPredicted RBP12.77□□□□□ -0.37
UPF1-203ENST00000594504 PPP1R9BQ96SB3 815 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 SELENOOQ9BVL4 669 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 TNKS2Q9H2K2 1166 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 KDM4CQ9H3R0 1056 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 ERVMER34-1Q9H9K5 563 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 FZD3Q9NPG1 666 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 TAS2R14Q9NYV8 317 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 VPS51Q9UID3 782 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 PAXBP1Q9Y5B6 917 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 PCDHGA1Q9Y5H4 931 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 ACTL7AQ9Y615 435 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 TDRD6O60522 2096 aaKnown RBP12.76□□□□□ -0.37
UPF1-203ENST00000594504 A0A1W2PQU0 124 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 TCRBV5S1A1TA0A578 114 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 C2CD4BA6NLJ0 364 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 DRGXA6NNA5 263 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 TMCO5BA8MYB1 307 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 KPNA3O00505 521 aaPredicted RBP12.76□□□□□ -0.37
UPF1-203ENST00000594504 TRIM38O00635 465 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 SRGAP2O75044 1071 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 MFAP3LO75121 409 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 ITPKBP27987 946 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 CLDN2P57739 230 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 KRT83P78385 493 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 TSR1Q2NL82 804 aaKnown RBP12.76□□□□□ -0.37
UPF1-203ENST00000594504 RAB6CQ53S08 254 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 ARSIQ5FYB1 569 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 BRMS1LQ5PSV4 323 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 HES3Q5TGS1 186 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 FBXL19Q6PCT2 694 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 TMC6Q7Z403 805 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 TFAP2DQ7Z6R9 452 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 PHLDB2Q86SQ0 1253 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 CNGA4Q8IV77 575 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 SLC25A45Q8N413 288 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 EMC1Q8N766 993 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 TRIM11Q96F44 468 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 KLHDC7BQ96G42 594 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 MRFAP1L1Q96HT8 127 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 CFAP57Q96MR6 1250 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.76□□□□□ -0.37
UPF1-203ENST00000594504 RAB6CQ9H0N0 254 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 ZNHIT6Q9NWK9 470 aaKnown RBP12.76□□□□□ -0.37
UPF1-203ENST00000594504 ZFR2Q9UPR6 939 aaKnown RBP12.76□□□□□ -0.37
UPF1-203ENST00000594504 DMTF1Q9Y222 760 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 HS3ST2Q9Y278 367 aa12.76□□□□□ -0.37
UPF1-203ENST00000594504 GOLGA4Q13439 2230 aaKnown RBP12.76□□□□□ -0.37
UPF1-203ENST00000594504 ANKRD62A6NC57 917 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 SIGLEC16A6NMB1 481 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 E9PAM4 449 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 PRAMEF26H0Y7S4 382 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 ALOX15BO15296 676 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 YKT6O15498 198 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 SIGLEC6O43699 453 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 TLX3O43711 291 aaPredicted RBP12.75□□□□□ -0.37
UPF1-203ENST00000594504 FTLP02792 175 aaPredicted RBP12.75□□□□□ -0.37
UPF1-203ENST00000594504 PLEKP08567 350 aaPredicted RBP12.75□□□□□ -0.37
UPF1-203ENST00000594504 C1SP09871 688 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 THEGLP0DJG4 465 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 MYF5P13349 255 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 CKMT2P17540 419 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 SDC4P31431 198 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 PTPN9P43378 593 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 ZNF75DP51815 510 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 SEMG2Q02383 582 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 TBX2Q13207 712 aaPredicted RBP12.75□□□□□ -0.37
UPF1-203ENST00000594504 SETMARQ53H47 684 aaPredicted RBP12.75□□□□□ -0.37
UPF1-203ENST00000594504 BNIPLQ7Z465 357 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 IQCHQ86VS3 1027 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 JOSD2Q8TAC2 188 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 RXFP2Q8WXD0 754 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 SPON2Q9BUD6 331 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 MAGEB5Q9BZ81 275 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 ISCUQ9H1K1 167 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 SCUBE2Q9NQ36 999 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 ABHD10Q9NUJ1 306 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 PARVAQ9NVD7 372 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 UCKL1Q9NWZ5 548 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 TPX2Q9ULW0 747 aaKnown RBP12.75□□□□□ -0.37
UPF1-203ENST00000594504 AK5Q9Y6K8 562 aa12.75□□□□□ -0.37
UPF1-203ENST00000594504 IGF2RP11717 2491 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 A0A087WV48 116 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 AKR1B15C9JRZ8 316 aaPredicted RBP12.74□□□□□ -0.37
UPF1-203ENST00000594504 ZNF821O75541 412 aaPredicted RBP12.74□□□□□ -0.37
UPF1-203ENST00000594504 PCDH8O95206 1070 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 GJB6O95452 261 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 MYBL1P10243 752 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 GPD1P21695 349 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 OR1E1P30953 314 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 RFC1P35251 1148 aaPredicted RBP12.74□□□□□ -0.37
UPF1-203ENST00000594504 HNF1BP35680 557 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 ADKP55263 362 aaKnown RBP12.74□□□□□ -0.37
UPF1-203ENST00000594504 ATP11AP98196 1134 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 ACAP1Q15027 740 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 ZNF284Q2VY69 593 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 CCDC14Q49A88 953 aa12.74□□□□□ -0.37
UPF1-203ENST00000594504 ZNF542PQ5EBM4 170 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms