RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 MAGEB5Q9BZ81 275 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 EBF2Q9HAK2 575 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 NDFIP2Q9NV92 336 aa12.62□□□□□ -0.39
SS18-225ENST00000585121 HECAQ9UBI9 543 aaPredicted RBP12.62□□□□□ -0.39
SS18-225ENST00000585121 PCNX2A6NKB5 2137 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 ADAMTS9Q9P2N4 1935 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 TMEM191CA6NGB0 347 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 PRAMEF26H0Y7S4 382 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 TLR4O00206 839 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 DDX3XO00571 662 aaKnown RBP eCLIP12.61□□□□□ -0.391e-15■■■□□ 17.7
SS18-225ENST00000585121 DAPK3O43293 454 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 ATMINO43313 823 aaPredicted RBP12.61□□□□□ -0.39
SS18-225ENST00000585121 KDELR3O43731 214 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 PRPSAP2O60256 369 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 RNGTTO60942 597 aaKnown RBP12.61□□□□□ -0.39
SS18-225ENST00000585121 PCDH8O95206 1070 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 CCNHP51946 323 aaPredicted RBP12.61□□□□□ -0.39
SS18-225ENST00000585121 NEK3P51956 506 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 TPI1P60174 286 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 ZBED6P86452 979 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 RAD51Q06609 339 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 PARP15Q460N3 678 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 ERMARDQ5T6L9 678 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 PIP5KL1Q5T9C9 394 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 FBXL19Q6PCT2 694 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 IQCHQ86VS3 1027 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 OXR1Q8N573 874 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 MFSD2AQ8NA29 543 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 FNIP1Q8TF40 1166 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 CPLX3Q8WVH0 158 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 ARRDC3Q96B67 414 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 LRIG1Q96JA1 1093 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 TM6SF2Q9BZW4 377 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 DHX35Q9H5Z1 703 aaKnown RBP12.61□□□□□ -0.39
SS18-225ENST00000585121 ZDHHC6Q9H6R6 413 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 PCOLCE2Q9UKZ9 415 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 AP4E1Q9UPM8 1137 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 APOBEC2Q9Y235 224 aaKnown RBP12.61□□□□□ -0.39
SS18-225ENST00000585121 LUC7L2Q9Y383 392 aaKnown RBP12.61□□□□□ -0.39
SS18-225ENST00000585121 CHD8Q9HCK8 2581 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 CEP295Q9C0D2 2601 aa12.61□□□□□ -0.39
SS18-225ENST00000585121 WASH4PA8MWX3 477 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 H0Y8X5 98 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 EEF2KO00418 725 aaKnown RBP12.6□□□□□ -0.39
SS18-225ENST00000585121 KCNK3O14649 394 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 YKT6O15498 198 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 POP4O95707 220 aaKnown RBP12.6□□□□□ -0.39
SS18-225ENST00000585121 GSRP00390 522 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 SERPING1P05155 500 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 ITGB7P26010 798 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 AKT2P31751 481 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 GRK6P43250 576 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 ARRB1P49407 418 aaPredicted RBP12.6□□□□□ -0.39
SS18-225ENST00000585121 OGDHQ02218 1023 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 OVGP1Q12889 678 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 E4F1Q66K89 784 aaPredicted RBP12.6□□□□□ -0.39
SS18-225ENST00000585121 HORMAD1Q86X24 394 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 OR2AP1Q8NGE2 309 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 ELF4Q99607 663 aaPredicted RBP12.6□□□□□ -0.39
SS18-225ENST00000585121 IFNKQ9P0W0 207 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 ARHGAP20Q9P2F6 1191 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 MYO1AQ9UBC5 1043 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 PCSK1NQ9UHG2 260 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 CAPN11Q9UMQ6 739 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 NEU3Q9UQ49 428 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.6□□□□□ -0.392e-6■■□□□ 14.5
SS18-225ENST00000585121 WASF2Q9Y6W5 498 aa12.6□□□□□ -0.39
SS18-225ENST00000585121 A0A1W2PQU0 124 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 A0A1W2PR77 199 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 C10orf142B7Z368 130 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 RASA4BC9J798 803 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 RASA4O43374 803 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 CBFA2T2O43439 604 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 PCDHGA12O60330 932 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 ZNF821O75541 412 aaPredicted RBP12.59□□□□□ -0.39
SS18-225ENST00000585121 WNT1P04628 370 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 PBX1P40424 430 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 ZNF135P52742 658 aaPredicted RBP12.59□□□□□ -0.39
SS18-225ENST00000585121 FAM193AP78312 1265 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 ACAP1Q15027 740 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 MYLK3Q32MK0 819 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 INO80DQ53TQ3 878 aaPredicted RBP12.59□□□□□ -0.39
SS18-225ENST00000585121 KCNT1Q5JUK3 1230 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 LEKR1Q6ZMV7 388 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 DBX2Q6ZNG2 339 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 ZSCAN30Q86W11 494 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 PSTKQ8IV42 348 aaKnown RBP12.59□□□□□ -0.39
SS18-225ENST00000585121 UMODL1-AS1Q8N2C9 162 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 HMCESQ96FZ2 354 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 FEM1CQ96JP0 617 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 GDAP1L1Q96MZ0 367 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 OSBPL1AQ9BXW6 950 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 ISCUQ9H1K1 167 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 GPATCH2LQ9NWQ4 482 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 ACTL7AQ9Y615 435 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 CABIN1Q9Y6J0 2220 aa12.59□□□□□ -0.39
SS18-225ENST00000585121 A0A1B0GTQ1 180 aa12.58□□□□□ -0.4
SS18-225ENST00000585121 ARHGAP42A6NI28 874 aa12.58□□□□□ -0.4
SS18-225ENST00000585121 KRIT1O00522 736 aa12.58□□□□□ -0.4
SS18-225ENST00000585121 NEMP1O14524 444 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms