RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 PLEKHG6Q3KR16 790 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 SOWAHCQ53LP3 525 aaPredicted RBP10.42□□□□□ -0.74
SS18-210ENST00000578700 ANKRD20A8PQ5CZ79 823 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 ZC3H12AQ5D1E8 599 aaKnown RBP10.42□□□□□ -0.74
SS18-210ENST00000578700 SPDYCQ5MJ68 293 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 CFAP58Q5T655 872 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 BSPRYQ5W0U4 402 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 GPRIN1Q7Z2K8 1008 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 RAB44Q7Z6P3 723 aaPredicted RBP10.42□□□□□ -0.74
SS18-210ENST00000578700 PDZD3Q86UT5 571 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 FAM131BQ86XD5 332 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 ACTL9Q8TC94 416 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 NT5C3BQ969T7 300 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 NTAN1Q96AB6 310 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 CEP295NLQ96MC4 621 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 HSPA12BQ96MM6 686 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 GDAP1L1Q96MZ0 367 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 CCDC86Q9H6F5 360 aaKnown RBP10.42□□□□□ -0.74
SS18-210ENST00000578700 CALCOCO1Q9P1Z2 691 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 DEC1Q9P2X7 70 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 ANAPC5Q9UJX4 755 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 R3HDM2Q9Y2K5 976 aaKnown RBP10.42□□□□□ -0.74
SS18-210ENST00000578700 SH3BP1Q9Y3L3 701 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 GPSM3Q9Y4H4 160 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 USP3Q9Y6I4 520 aa10.42□□□□□ -0.74
SS18-210ENST00000578700 IGHV1OR15-9A0A0B4J2B8 117 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 GOLGA6L10A6NI86 522 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 H7C0C1 242 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 MAP2K7O14733 419 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 STK10O94804 968 aaKnown RBP10.41□□□□□ -0.74
SS18-210ENST00000578700 FTH1P19P0C7X4 201 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 PFKLP17858 780 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 STIP1P31948 543 aaKnown RBP10.41□□□□□ -0.74
SS18-210ENST00000578700 L1CAMP32004 1257 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 EIF2DP41214 584 aaKnown RBP10.41□□□□□ -0.74
SS18-210ENST00000578700 ATP5OP48047 213 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 PPP3CCP48454 512 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 HNRNPDQ14103 355 aaKnown RBP10.41□□□□□ -0.74
SS18-210ENST00000578700 SYPL2Q5VXT5 272 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 SDE2Q6IQ49 451 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 DARS2Q6PI48 645 aaKnown RBP10.41□□□□□ -0.74
SS18-210ENST00000578700 NUDT18Q6ZVK8 323 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 TRMT11Q7Z4G4 463 aaKnown RBP10.41□□□□□ -0.74
SS18-210ENST00000578700 PCGF5Q86SE9 256 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 DDX42Q86XP3 938 aaKnown RBP eCLIP10.41□□□□□ -0.74
SS18-210ENST00000578700 SLC41A1Q8IVJ1 513 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 CDKL3Q8IVW4 592 aaPredicted RBP10.41□□□□□ -0.74
SS18-210ENST00000578700 CHPFQ8IZ52 775 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 MREGQ8N565 214 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 SPDYE1Q8NFV5 336 aaPredicted RBP10.41□□□□□ -0.74
SS18-210ENST00000578700 MDM1Q8TC05 714 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 NDRG1Q92597 394 aaKnown RBP10.41□□□□□ -0.74
SS18-210ENST00000578700 EDEM1Q92611 657 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 PGAP3Q96FM1 320 aaPredicted RBP10.41□□□□□ -0.74
SS18-210ENST00000578700 HERPUD2Q9BSE4 406 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 FOXP3Q9BZS1 431 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 SLC6A17Q9H1V8 727 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 WDCPQ9H6R7 721 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 CAPN10Q9HC96 672 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 MED4Q9NPJ6 270 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 ASH1LQ9NR48 2969 aaKnown RBP10.41□□□□□ -0.74
SS18-210ENST00000578700 OLA1Q9NTK5 396 aaKnown RBP10.41□□□□□ -0.74
SS18-210ENST00000578700 GPATCH2LQ9NWQ4 482 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 TBC1D14Q9P2M4 693 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 DNPEPQ9ULA0 475 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 FZD10Q9ULW2 581 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 RAD54BQ9Y620 910 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 APC2O95996 2303 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 PCDH15Q96QU1 1955 aa10.41□□□□□ -0.74
SS18-210ENST00000578700 A0A0A0MRY4 1105 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 FAM221BA6H8Z2 402 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 GOLGA8CPA6NN73 597 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 BHMG1C9JSJ3 638 aaPredicted RBP10.4□□□□□ -0.74
SS18-210ENST00000578700 SMAPO00193 183 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 EEF2KO00418 725 aaKnown RBP10.4□□□□□ -0.74
SS18-210ENST00000578700 TULP3O75386 442 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 OAS1P00973 400 aaKnown RBP10.4□□□□□ -0.74
SS18-210ENST00000578700 IFNB1P01574 187 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 CD48P09326 243 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 RBP3P10745 1247 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 SLC2A3P11169 496 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 YWHAQP27348 245 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 NTSR1P30989 418 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 ADRA1BP35368 520 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 HOXD12P35452 270 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 HSPA9P38646 679 aaKnown RBP10.4□□□□□ -0.74
SS18-210ENST00000578700 RPL21P46778 160 aaKnown RBP10.4□□□□□ -0.74
SS18-210ENST00000578700 ARSEP51690 589 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 DHX9Q08211 1270 aaKnown RBP10.4□□□□□ -0.74
SS18-210ENST00000578700 MTA1Q13330 715 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 TRIP13Q15645 432 aaPredicted RBP10.4□□□□□ -0.74
SS18-210ENST00000578700 PREPLQ4J6C6 727 aaPredicted RBP10.4□□□□□ -0.74
SS18-210ENST00000578700 BRMS1LQ5PSV4 323 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 SYCP2LQ5T4T6 812 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 PEAR1Q5VY43 1037 aaPredicted RBP10.4□□□□□ -0.74
SS18-210ENST00000578700 EGFLAMQ63HQ2 1017 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 SLC9A4Q6AI14 798 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 KIAA1324Q6UXG2 1013 aaKnown RBP10.4□□□□□ -0.74
SS18-210ENST00000578700 C4orf22Q6V702 233 aa10.4□□□□□ -0.74
SS18-210ENST00000578700 CYP4V2Q6ZWL3 525 aaPredicted RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms