RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 SULT2A1Q06520 285 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 NIPAL4Q0D2K0 466 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 MPP3Q13368 585 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 UAP1Q16222 522 aaPredicted RBP13.9□□□□□ -0.18
CCDC40-209ENST00000573474 BBS9Q3SYG4 887 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 ALS2CLQ60I27 953 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 ALG1LQ6GMV1 187 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 NAPEPLDQ6IQ20 393 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 PARM1Q6UWI2 310 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 LINGO4Q6UY18 593 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 KIAA0907Q7Z7F0 614 aaPredicted RBP13.9□□□□□ -0.18
CCDC40-209ENST00000573474 LINC00523Q86TU6 105 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 METTL3Q86U44 580 aaKnown RBP13.9□□□□□ -0.18
CCDC40-209ENST00000573474 PRPF39Q86UA1 669 aaKnown RBP13.9□□□□□ -0.18
CCDC40-209ENST00000573474 CPA6Q8N4T0 437 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.9□□□□□ -0.18
CCDC40-209ENST00000573474 SPATA22Q8NHS9 363 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 ARRDC2Q8TBH0 407 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 UBLCP1Q8WVY7 318 aaPredicted RBP13.9□□□□□ -0.18
CCDC40-209ENST00000573474 ZFYVE19Q96K21 471 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 TTC25Q96NG3 672 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 KXD1Q9BQD3 176 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 MGME1Q9BQP7 344 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 PLA2G2FQ9BZM2 168 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 SEMA4AQ9H3S1 761 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 EBF3Q9H4W6 596 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 ECT2Q9H8V3 914 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 VPS45Q9NRW7 570 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 UBP1Q9NZI7 540 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 ACTL7AQ9Y615 435 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 CDH23Q9H251 3354 aa13.9□□□□□ -0.18
CCDC40-209ENST00000573474 H3BQ06 376 aaPredicted RBP13.89□□□□□ -0.19
CCDC40-209ENST00000573474 MUSKO15146 869 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 TMCC1O94876 653 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 TTC4O95801 387 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 MT-CYBP00156 380 aaPredicted RBP13.89□□□□□ -0.19
CCDC40-209ENST00000573474 CISD3P0C7P0 127 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 CD86P42081 329 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 GRIA1P42261 906 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 MAGEA3P43357 314 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 DSC2Q02487 901 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 NSUN2Q08J23 767 aaKnown RBP eCLIP13.89□□□□□ -0.19
CCDC40-209ENST00000573474 GRM2Q14416 872 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 SPARCL1Q14515 664 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 SLC14A2Q15849 920 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 MSS51Q4VC12 460 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 CFAP58Q5T655 872 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 ZNF534Q76KX8 674 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 ZBED8Q8IZ13 594 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 AHI1Q8N157 1196 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 NAT16Q8N8M0 369 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 ST13P5Q8NFI4 369 aaPredicted RBP13.89□□□□□ -0.19
CCDC40-209ENST00000573474 WFIKKN2Q8TEU8 576 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 PYROXD1Q8WU10 500 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 MYLIPQ8WY64 445 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 TADA1Q96BN2 335 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 LRRC39Q96DD0 335 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 CDX2Q99626 313 aaPredicted RBP13.89□□□□□ -0.19
CCDC40-209ENST00000573474 SEMA3CQ99985 751 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 TBL1YQ9BQ87 522 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 CDC42EP4Q9H3Q1 356 aaKnown RBP13.89□□□□□ -0.19
CCDC40-209ENST00000573474 UBE2ZQ9H832 354 aaPredicted RBP13.89□□□□□ -0.19
CCDC40-209ENST00000573474 CASS4Q9NQ75 786 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 HPS4Q9NQG7 708 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 NINJ2Q9NZG7 142 aa13.89□□□□□ -0.19
CCDC40-209ENST00000573474 GRXCR2A6NFK2 248 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 ANHXE9PGG2 379 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 AVILO75366 819 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 PMPCBO75439 489 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 SASH3O75995 380 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 MMP2P08253 660 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 TSHRP16473 764 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 ADRA1AP35348 466 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 DGKGP49619 791 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 SERPINH1P50454 418 aaKnown RBP13.88□□□□□ -0.19
CCDC40-209ENST00000573474 WNT3AP56704 352 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 SKOR1P84550 965 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 SMAD4Q13485 552 aaKnown RBP13.88□□□□□ -0.19
CCDC40-209ENST00000573474 RUNX3Q13761 415 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 CCDC85BQ15834 202 aaPredicted RBP13.88□□□□□ -0.19
CCDC40-209ENST00000573474 KYNUQ16719 465 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 FUT11Q495W5 492 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 CCDC38Q502W7 563 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 RALGPS1Q5JS13 557 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 DENND2CQ68D51 928 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 KDELC1Q6UW63 502 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 ADIPOR2Q86V24 386 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 ETFBKMTQ8IXQ9 262 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 IQCKQ8N0W5 287 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 IPMKQ8NFU5 416 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 FGF14Q92915 247 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 TTC17Q96AE7 1141 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 TRMT61BQ9BVS5 477 aaKnown RBP13.88□□□□□ -0.19
CCDC40-209ENST00000573474 EPB41L4BQ9H329 900 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 ACBD3Q9H3P7 528 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 SLC25A13Q9UJS0 675 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 SLC27A6Q9Y2P4 619 aa13.88□□□□□ -0.19
CCDC40-209ENST00000573474 SDR42E2A6NKP2 422 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 INSIG1O15503 277 aa13.87□□□□□ -0.19
CCDC40-209ENST00000573474 RIPK2O43353 540 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms