RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SNX10Q9Y5X0 201 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 MAD1L1Q9Y6D9 718 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 ZFP37Q9Y6Q3 630 aaPredicted RBP8.11□□□□□ -1.11
VPS39-213ENST00000570062 FAM237BA0A1B0GVD1 139 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 TCRBV7S3A2A0A539 114 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 H0Y626 953 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 CLASP2O75122 1294 aaKnown RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 USP1O94782 785 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 ALDH1A2O94788 518 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 MAP3K6O95382 1288 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 SHBGP04278 402 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 SYN1P17600 705 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 NFKB1P19838 968 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 POLD2P49005 469 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 KCNQ1P51787 676 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 MAGOHP61326 146 aaKnown RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 ZNF235Q14590 738 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 LBRQ14739 615 aaKnown RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 E2F5Q15329 346 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 TERF2Q15554 542 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 UGP2Q16851 508 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 FAM133BQ5BKY9 247 aaKnown RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 TTMPQ5BVD1 217 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 PCID2Q5JVF3 399 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 STEAP4Q687X5 459 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 IL31Q6EBC2 164 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 CASC4Q6P4E1 433 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 TMC8Q8IU68 726 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 ANKMY2Q8IV38 441 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 OR2W6PQ8NHA6 318 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 ZSCAN18Q8TBC5 510 aaPredicted RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 FBF1Q8TES7 1133 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 SLC22A17Q8WUG5 538 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 SCG3Q8WXD2 468 aaKnown RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 ARHGEF2Q92974 986 aaKnown RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 IMP4Q96G21 291 aaKnown RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 PSKH2Q96QS6 385 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 SMC6Q96SB8 1091 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 CORO1BQ9BR76 489 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 C2orf49Q9BVC5 232 aaPredicted RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 CAPS2Q9BXY5 557 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 LRRC3Q9BY71 257 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 ACE2Q9BYF1 805 aaPredicted RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 RNF38Q9H0F5 515 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 ALG13Q9NP73 1137 aaKnown RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 PRDM6Q9NQX0 595 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 NKIRAS1Q9NYS0 192 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 KIAA1522Q9P206 1035 aaPredicted RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 UBA2Q9UBT2 640 aaPredicted RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 MFHAS1Q9Y4C4 1052 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 CPQQ9Y646 472 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.1□□□□□ -1.11
VPS39-213ENST00000570062 FAM169AQ9Y6X4 670 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 PATJQ8NI35 1801 aa8.1□□□□□ -1.11
VPS39-213ENST00000570062 TET1Q8NFU7 2136 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 NLRC5Q86WI3 1866 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 SCN5AQ14524 2016 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 A0A1W2PQ67 120 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 TCRBV9S1A1TA0A576 114 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 HEATR9A2RTY3 570 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 C2orf78A6NCI8 922 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 HIDE1A8MVS5 230 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 CNTN5O94779 1100 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 PAPSS2O95340 614 aaPredicted RBP8.09□□□□□ -1.11
VPS39-213ENST00000570062 SERPINF2P08697 491 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 SNRPAP09012 282 aaKnown RBP8.09□□□□□ -1.11
VPS39-213ENST00000570062 MYL4P12829 197 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 ALADP13716 330 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 KRT15P19012 456 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 HLA-DPA1P20036 260 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 ADRA1DP25100 572 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 SSTR1P30872 391 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 MDH1P40925 334 aaKnown RBP8.09□□□□□ -1.11
VPS39-213ENST00000570062 PLK1P53350 603 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 GPX6P59796 221 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 PDE1BQ01064 536 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 SULT2A1Q06520 285 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 ITKQ08881 620 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 MGAT5Q09328 741 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 ZBTB17Q13105 803 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 CDH18Q13634 790 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 DMC1Q14565 340 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 SEPT7Q16181 437 aaKnown RBP8.09□□□□□ -1.11
VPS39-213ENST00000570062 LONRF1Q17RB8 773 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 ALFQ53S48 1182 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 ARTNQ5T4W7 220 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 FAXCQ5TGI0 409 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 FYB2Q5VWT5 728 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 TXNDC8Q6A555 127 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 ALG1LQ6GMV1 187 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 NADSYN1Q6IA69 706 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 LEKR1Q6ZMV7 388 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 TFAP2DQ7Z6R9 452 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 TMEM150AQ86TG1 271 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 TMEM135Q86UB9 458 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 LCA5Q86VQ0 697 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 CNTD1Q8N815 330 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 ARL14EPQ8N8R7 260 aaPredicted RBP8.09□□□□□ -1.11
VPS39-213ENST00000570062 MAB21L3Q8N8X9 362 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 PPHLN1Q8NEY8 458 aaKnown RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms