RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 B3GALT6Q96L58 329 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 TSNARE1Q96NA8 513 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 PANX3Q96QZ0 392 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 SLC9A7Q96T83 725 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 DICER1Q9UPY3 1922 aaKnown RBP8.89□□□□□ -0.99
LINC00558-201ENST00000569422 EPHA3P29320 983 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 GRK4P32298 578 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 MSX2P35548 267 aaPredicted RBP8.89□□□□□ -0.99
LINC00558-201ENST00000569422 GALNT2Q10471 571 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 MAPRE1Q15691 268 aaKnown RBP8.89□□□□□ -0.99
LINC00558-201ENST00000569422 INTS6LQ5JSJ4 861 aaKnown RBP8.89□□□□□ -0.99
LINC00558-201ENST00000569422 RAB41Q5JT25 222 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 BNIPLQ7Z465 357 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 C14orf80Q86SX3 495 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 MIB1Q86YT6 1006 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 RBM12BQ8IXT5 1001 aaKnown RBP8.89□□□□□ -0.99
LINC00558-201ENST00000569422 FAM136AQ96C01 138 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 HDAC11Q96DB2 347 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 KLHL5Q96PQ7 755 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 ZIC5Q96T25 663 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 NDNQ99608 321 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 NUF2Q9BZD4 464 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 SENP6Q9GZR1 1112 aaPredicted RBP8.89□□□□□ -0.99
LINC00558-201ENST00000569422 NMRK2Q9NPI5 230 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 TRPV5Q9NQA5 729 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 PTCH2Q9Y6C5 1203 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 C9IYK1 514 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 NCAM2O15394 837 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 BUD23O43709 281 aaKnown RBP8.89□□□□□ -0.99
LINC00558-201ENST00000569422 TBX18O95935 607 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 AHSGP02765 367 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 ETFBP38117 255 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 OR1G1P47890 313 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 GJA9P57773 515 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 TSPY1Q01534 308 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 SLC34A1Q06495 639 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 PDCD2Q16342 344 aaPredicted RBP8.89□□□□□ -0.99
LINC00558-201ENST00000569422 AP1ARQ63HQ0 302 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 NAPEPLDQ6IQ20 393 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 LRRC74BQ6ZQY2 392 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 RPS27LQ71UM5 84 aaKnown RBP8.89□□□□□ -0.99
LINC00558-201ENST00000569422 LDB1Q86U70 411 aaPredicted RBP8.89□□□□□ -0.99
LINC00558-201ENST00000569422 ZNF280BQ86YH2 543 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 TDRD5Q8NAT2 981 aaKnown RBP8.89□□□□□ -0.99
LINC00558-201ENST00000569422 SLC26A7Q8TE54 656 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 TRIB2Q92519 343 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 SPDL1Q96EA4 605 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 OR52B2Q96RD2 323 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 NMUR1Q9HB89 426 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 CHST12Q9NRB3 414 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 GIT1Q9Y2X7 761 aa8.89□□□□□ -0.99
LINC00558-201ENST00000569422 A0A1W2PQH9 124 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 AIM2O14862 343 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 AURKAO14965 403 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 CFLARO15519 480 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 DUSP11O75319 330 aaKnown RBP8.88□□□□□ -0.99
LINC00558-201ENST00000569422 LMNAP02545 664 aaKnown RBP8.88□□□□□ -0.99
LINC00558-201ENST00000569422 ELNP15502 786 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 VHLP40337 213 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 FLT3LGP49771 235 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 COPAP53621 1224 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 FKBP1BP68106 108 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 YWHAHQ04917 246 aaPredicted RBP8.88□□□□□ -0.99
LINC00558-201ENST00000569422 KCNA10Q16322 511 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 KCTD11Q693B1 232 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 C17orf99Q6UX52 265 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 CYS1Q717R9 158 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.88□□□□□ -0.99
LINC00558-201ENST00000569422 DEFB107AQ8IZN7 70 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 THEM5Q8N1Q8 247 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 RNF148Q8N7C7 305 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 ENDOVQ8N8Q3 282 aaKnown RBP8.88□□□□□ -0.99
LINC00558-201ENST00000569422 PPFIBP2Q8ND30 876 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 UCMAQ8WVF2 138 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 MIEF2Q96C03 454 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 ELMO2Q96JJ3 720 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 GATA5Q9BWX5 397 aaPredicted RBP8.88□□□□□ -0.99
LINC00558-201ENST00000569422 ACE2Q9BYF1 805 aaPredicted RBP8.88□□□□□ -0.99
LINC00558-201ENST00000569422 IL22Q9GZX6 179 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 CYP4F12Q9HCS2 524 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 TRHDEQ9UKU6 1024 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 SOX13Q9UN79 622 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 NEMP2A6NFY4 417 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 PRSS47A8MTI9 375 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 G3V2L1 256 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 TRIM13O60858 407 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 TM7SF2O76062 418 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 IL1BP01584 269 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 GRK2P25098 689 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 GABRB3P28472 473 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 TSPAN7P41732 249 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 GRIA4P48058 902 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 PLK1P53350 603 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 SCAPQ12770 1279 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 TUBB3Q13509 450 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 TMEM198Q66K66 360 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 DCLRE1AQ6PJP8 1040 aa8.88□□□□□ -0.99
LINC00558-201ENST00000569422 CCBE1Q6UXH8 406 aaPredicted RBP8.88□□□□□ -0.99
LINC00558-201ENST00000569422 CIR1Q86X95 450 aaPredicted RBP8.88□□□□□ -0.99
LINC00558-201ENST00000569422 RASAL3Q86YV0 1011 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms