RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CCNHP51946 323 aaPredicted RBP20.67■□□□□ 0.9
CLK3-225ENST00000569063 C21orf59P57076 290 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 ZNF423Q2M1K9 1284 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 PARP15Q460N3 678 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 NEK5Q6P3R8 708 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 ERN2Q76MJ5 926 aaKnown RBP20.67■□□□□ 0.9
CLK3-225ENST00000569063 GRIN3AQ8TCU5 1115 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 CAMK1GQ96NX5 476 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 PEBP4Q96S96 227 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 NCAPGQ9BPX3 1015 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.67■□□□□ 0.9
CLK3-225ENST00000569063 XPO4Q9C0E2 1151 aaKnown RBP20.67■□□□□ 0.9
CLK3-225ENST00000569063 AASDHPPTQ9NRN7 309 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 DONSONQ9NYP3 566 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 MYO1AQ9UBC5 1043 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 HECAQ9UBI9 543 aaPredicted RBP20.67■□□□□ 0.9
CLK3-225ENST00000569063 ANGPTL2Q9UKU9 493 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 DMTF1Q9Y222 760 aa20.67■□□□□ 0.9
CLK3-225ENST00000569063 CNOT1A5YKK6 2376 aaKnown RBP20.67■□□□□ 0.9
CLK3-225ENST00000569063 SPTBN2O15020 2390 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 DFNA5O60443 496 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 WNT1P04628 370 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 MIPP30301 263 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 TPI1P60174 286 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 ACAP1Q15027 740 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 NAPEPLDQ6IQ20 393 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 CYP4V2Q6ZWL3 525 aaPredicted RBP20.66■□□□□ 0.9
CLK3-225ENST00000569063 PSTKQ8IV42 348 aaKnown RBP20.66■□□□□ 0.9
CLK3-225ENST00000569063 CASKIN2Q8WXE0 1202 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 LRIG1Q96JA1 1093 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 TM6SF2Q9BZW4 377 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 GPATCH2LQ9NWQ4 482 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 PCSK1NQ9UHG2 260 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 WASF3Q9UPY6 502 aa20.66■□□□□ 0.9
CLK3-225ENST00000569063 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.66■□□□□ 0.93e-7■■■□□ 15.1
CLK3-225ENST00000569063 SPAARA0A1B0GVQ0 90 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 RASA4BC9J798 803 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 RASA4O43374 803 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 PRPSAP2O60256 369 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 CBFA2T3O75081 653 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 GSRP00390 522 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 ITGB7P26010 798 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 MAT2AP31153 395 aaKnown RBP20.65■□□□□ 0.9
CLK3-225ENST00000569063 FAM193AP78312 1265 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 SIM1P81133 766 aaPredicted RBP20.65■□□□□ 0.9
CLK3-225ENST00000569063 SERINC3Q13530 473 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 TRIP6Q15654 476 aaKnown RBP20.65■□□□□ 0.9
CLK3-225ENST00000569063 CA9Q16790 459 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 INO80DQ53TQ3 878 aaPredicted RBP20.65■□□□□ 0.9
CLK3-225ENST00000569063 SLC45A4Q5BKX6 768 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 OR2AP1Q8NGE2 309 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 HMCESQ96FZ2 354 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 SNRNP25Q9BV90 132 aaKnown RBP20.65■□□□□ 0.9
CLK3-225ENST00000569063 DHX35Q9H5Z1 703 aaKnown RBP20.65■□□□□ 0.9
CLK3-225ENST00000569063 PCOLCE2Q9UKZ9 415 aa20.65■□□□□ 0.9
CLK3-225ENST00000569063 A0A087X0T9 212 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 H0Y8X5 98 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 KCNK3O14649 394 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 BUB1O43683 1085 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 PCDHGA12O60330 932 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 RNGTTO60942 597 aaKnown RBP20.64■□□□□ 0.89
CLK3-225ENST00000569063 LRCH4O75427 683 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 FAM228BP0C875 321 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 HNRNPH3P31942 346 aaKnown RBP20.64■□□□□ 0.89
CLK3-225ENST00000569063 CASP14P31944 242 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 PCK1P35558 622 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 NEK3P51956 506 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 NDST2P52849 883 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 SNRPD1P62314 119 aaKnown RBP20.64■□□□□ 0.89
CLK3-225ENST00000569063 SUZ12Q15022 739 aaKnown RBP20.64■□□□□ 0.89
CLK3-225ENST00000569063 SETMARQ53H47 684 aaPredicted RBP20.64■□□□□ 0.89
CLK3-225ENST00000569063 LEKR1Q6ZMV7 388 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 ZNF354CQ86Y25 554 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 MFSD2AQ8NA29 543 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 VOPP1Q96AW1 172 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 KLC2Q9H0B6 622 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 TSPY26PQ9H489 355 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 LRRC19Q9H756 370 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 PCDHB9Q9Y5E1 797 aa20.64■□□□□ 0.89
CLK3-225ENST00000569063 A0A1W2PQU0 124 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 PRAMEF26H0Y7S4 382 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 TLR4O00206 839 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 EEF2KO00418 725 aaKnown RBP20.63■□□□□ 0.89
CLK3-225ENST00000569063 FLRT2O43155 660 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 TMCC1O94876 653 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 POP4O95707 220 aaKnown RBP20.63■□□□□ 0.89
CLK3-225ENST00000569063 ADRB3P13945 408 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 HCAR3P49019 387 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 CCT8P50990 548 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 ZNF135P52742 658 aaPredicted RBP20.63■□□□□ 0.89
CLK3-225ENST00000569063 MYLK3Q32MK0 819 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 GLRX5Q86SX6 157 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 IQCHQ86VS3 1027 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 HORMAD1Q86X24 394 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 SETD7Q8WTS6 366 aaKnown RBP20.63■□□□□ 0.89
CLK3-225ENST00000569063 CNTNAP3BQ96NU0 1288 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 CNTNAP3Q9BZ76 1288 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 THAP2Q9H0W7 228 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 ZDHHC6Q9H6R6 413 aa20.63■□□□□ 0.89
CLK3-225ENST00000569063 PCNX2A6NKB5 2137 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms