RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ADAMTSL2Q86TH1 951 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 MMAAQ8IVH4 418 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 CDH26Q8IXH8 852 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 C12orf56Q8IXR9 622 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 SYTL1Q8IYJ3 562 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ZBED8Q8IZ13 594 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CACNA2D3Q8IZS8 1091 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CBARPQ8N350 705 aaPredicted RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 FBXL16Q8N461 479 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CCNYL1Q8N7R7 359 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ENDOVQ8N8Q3 282 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 ATP6V0D2Q8N8Y2 350 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ZNF565Q8N9K5 539 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 XXYLT1Q8NBI6 393 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ATAD1Q8NBU5 361 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CPEB3Q8NE35 698 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 OR6C4Q8NGE1 309 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 OR52K2Q8NGK3 314 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 GOT1L1Q8NHS2 421 aaPredicted RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 ENKURQ8TC29 256 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 PYROXD1Q8WU10 500 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 DNAJC9Q8WXX5 260 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 SEPT1Q8WYJ6 367 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 HOXB13Q92826 284 aaPredicted RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 ATP6V1E2Q96A05 226 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 HDAC11Q96DB2 347 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CHFRQ96EP1 664 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ZNF274Q96GC6 653 aaPredicted RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 FUBP3Q96I24 572 aaKnown RBP eCLIP3.35□□□□□ -1.87
VPS35-208ENST00000568612 IFT74Q96LB3 600 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ZSCAN31Q96LW9 406 aaPredicted RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 CCT8L2Q96SF2 557 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 GAL3ST1Q99999 423 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ZSWIM1Q9BR11 485 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CALN1Q9BXU9 219 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 IFIH1Q9BYX4 1025 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 IMPG2Q9BZV3 1241 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 LMAN2LQ9H0V9 348 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 STMN4Q9H169 189 aaPredicted RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 NCOR1P1Q9H4R4 102 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 DENND2DQ9H6A0 471 aaPredicted RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 ATP13A3Q9H7F0 1226 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 VPS37BQ9H9H4 285 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 RNPEPL1Q9HAU8 725 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 NTN4Q9HB63 628 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 MRM3Q9HC36 420 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 POLE3Q9NRF9 147 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 TBC1D22BQ9NU19 505 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 TDP1Q9NUW8 608 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 DDX18Q9NVP1 670 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 EHD3Q9NZN3 535 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 AMACRQ9UHK6 382 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CDC23Q9UJX2 597 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 PCDHA12Q9UN75 941 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 FAF1Q9UNN5 650 aaPredicted RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 ERVK-11Q9UQG0 969 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 SIK3Q9Y2K2 1263 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ANGPTL3Q9Y5C1 460 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 PCDHA13Q9Y5I0 950 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 EID1Q9Y6B2 187 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 EPN1Q9Y6I3 576 aaPredicted RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 CEP152O94986 1710 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 SUPT6HQ7KZ85 1726 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 PNPLA6Q8IY17 1366 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 WNK3Q9BYP7 1800 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 UHRF1BP1Q6BDS2 1440 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 MED14O60244 1454 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ATP7BP35670 1465 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ARHGAP35Q9NRY4 1499 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 LRRC7Q96NW7 1537 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CEP170Q5SW79 1584 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CHD1O14646 1710 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 LRRIQ1Q96JM4 1722 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 A0A087X1B8 175 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 PVALEFA0A1B0GWK0 134 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 TCRBV7S2A1N4TA0A589 114 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 SH3PXD2BA1X283 911 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CTAGE15A4D2H0 777 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 TMEM191CA6NGB0 347 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ZSCAN5BA6NJL1 495 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 A8MX80 341 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 H3BQV1 296 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 K7ENM7 598 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 E2F3O00716 465 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 SLC9A3R1O14745 358 aaPredicted RBP3.34□□□□□ -1.87
VPS35-208ENST00000568612 GABRDO14764 452 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 KPNA5O15131 536 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 MAGEB3O15480 346 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 TLR2O60603 784 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ERN1O75460 977 aaKnown RBP3.34□□□□□ -1.87
VPS35-208ENST00000568612 JRKO75564 520 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 DNAJB5O75953 348 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 UFL1O94874 794 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 RHOBTB3O94955 611 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CHEK2O96017 543 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CTAGE8P0CG41 777 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CPA1P15085 419 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ITGAXP20702 1163 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 DDCP20711 480 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 PBLDP30039 288 aaPredicted RBP3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms