RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TPRP12270 2363 aaKnown RBP21.12■□□□□ 0.97
CLN3-219ENST00000565778 CXorf51AA0A1B0GTR3 108 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 A0A1W2PQU0 124 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 GOLGA8CPA6NN73 597 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 PRAMEF26H0Y7S4 382 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 SLC31A1O15431 190 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 BUB1O43683 1085 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 KDELR3O43731 214 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 SKILP12757 684 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 PSMA2P25787 234 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 CCNHP51946 323 aaPredicted RBP21.12■□□□□ 0.97
CLN3-219ENST00000565778 AIF1P55008 147 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 OGDHQ02218 1023 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 FBXL19Q6PCT2 694 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 UNQ6494/PRO21346Q6UXR6 183 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 RAB44Q7Z6P3 723 aaPredicted RBP21.12■□□□□ 0.97
CLN3-219ENST00000565778 SLCO6A1Q86UG4 719 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 LUZP1Q86V48 1076 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 DNAAF5Q86Y56 855 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 EPAS1Q99814 870 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 ZDHHC6Q9H6R6 413 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 CATSPERBQ9H7T0 1116 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 NEU3Q9UQ49 428 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 WASF2Q9Y6W5 498 aa21.12■□□□□ 0.97
CLN3-219ENST00000565778 ACACBO00763 2458 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 DOCK4Q8N1I0 1966 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 MAGEC1O60732 1142 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 ITGAVP06756 1048 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 PROS1P07225 676 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 GZMAP12544 262 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 ARRB1P49407 418 aaPredicted RBP21.11■□□□□ 0.97
CLN3-219ENST00000565778 NXPH1P58417 271 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 FANCCQ00597 558 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 INAVAQ3KP66 663 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 PLEKHA7Q6IQ23 1121 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 HORMAD1Q86X24 394 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 GATAD2AQ86YP4 633 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 PLPP6Q8IY26 295 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 RTL3Q8N8U3 475 aaKnown RBP21.11■□□□□ 0.97
CLN3-219ENST00000565778 ADAMTS14Q8WXS8 1223 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 MSRB2Q9Y3D2 182 aa21.11■□□□□ 0.97
CLN3-219ENST00000565778 PLXNA2O75051 1894 aa21.1■□□□□ 0.97
CLN3-219ENST00000565778 DDX3XO00571 662 aaKnown RBP eCLIP21.1■□□□□ 0.971e-10■■■□□ 15.1
CLN3-219ENST00000565778 ATMINO43313 823 aaPredicted RBP21.1■□□□□ 0.97
CLN3-219ENST00000565778 ATXN1LP0C7T5 689 aaKnown RBP21.1■□□□□ 0.97
CLN3-219ENST00000565778 PRLRP16471 622 aa21.1■□□□□ 0.97
CLN3-219ENST00000565778 PRKCIP41743 596 aa21.1■□□□□ 0.97
CLN3-219ENST00000565778 NEK3P51956 506 aa21.1■□□□□ 0.97
CLN3-219ENST00000565778 UBASH3AP57075 661 aa21.1■□□□□ 0.97
CLN3-219ENST00000565778 YBEYP58557 167 aaPredicted RBP21.1■□□□□ 0.97
CLN3-219ENST00000565778 SNRPD1P62314 119 aaKnown RBP21.1■□□□□ 0.97
CLN3-219ENST00000565778 E4F1Q66K89 784 aaPredicted RBP21.1■□□□□ 0.97
CLN3-219ENST00000565778 IQCHQ86VS3 1027 aa21.1■□□□□ 0.97
CLN3-219ENST00000565778 OR6K2Q8NGY2 324 aa21.1■□□□□ 0.97
CLN3-219ENST00000565778 BAHD1Q8TBE0 780 aaPredicted RBP21.1■□□□□ 0.97
CLN3-219ENST00000565778 KLHDC7BQ96G42 594 aa21.1■□□□□ 0.97
CLN3-219ENST00000565778 FEM1CQ96JP0 617 aa21.1■□□□□ 0.97
CLN3-219ENST00000565778 MYOCQ99972 504 aa21.1■□□□□ 0.97
CLN3-219ENST00000565778 CA5BQ9Y2D0 317 aa21.1■□□□□ 0.97
CLN3-219ENST00000565778 KNL1Q8NG31 2342 aa21.1■□□□□ 0.97
CLN3-219ENST00000565778 NYNRINQ9P2P1 1898 aaKnown RBP21.09■□□□□ 0.97
CLN3-219ENST00000565778 TMEM191CA6NGB0 347 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 ZSCAN5CA6NGD5 496 aaPredicted RBP21.09■□□□□ 0.97
CLN3-219ENST00000565778 GOLGA6L19H0YKK7 550 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 KRIT1O00522 736 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 TNFSF14O43557 240 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 RNF8O76064 485 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 POP4O95707 220 aaKnown RBP21.09■□□□□ 0.97
CLN3-219ENST00000565778 ADRB3P13945 408 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 ITGB7P26010 798 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 GKP32189 559 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 OVGP1Q12889 678 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 ZNF284Q2VY69 593 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 MYLK3Q32MK0 819 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 SPATS2Q86XZ4 545 aaKnown RBP21.09■□□□□ 0.97
CLN3-219ENST00000565778 OR2AP1Q8NGE2 309 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 TTYH3Q9C0H2 523 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 NOL6Q9H6R4 1146 aaKnown RBP21.09■□□□□ 0.97
CLN3-219ENST00000565778 ERVMER34-1Q9H9K5 563 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 GPATCH2LQ9NWQ4 482 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 MYO1AQ9UBC5 1043 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 CNOT8Q9UFF9 292 aaKnown RBP21.09■□□□□ 0.97
CLN3-219ENST00000565778 PCSK1NQ9UHG2 260 aa21.09■□□□□ 0.97
CLN3-219ENST00000565778 WASH4PA8MWX3 477 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 RASA4BC9J798 803 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 YKT6O15498 198 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 RASA4O43374 803 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 AKT2P31751 481 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 TPI1P60174 286 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 BNIP3Q12983 259 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 MAPK8IP2Q13387 824 aaPredicted RBP21.08■□□□□ 0.97
CLN3-219ENST00000565778 SHBQ15464 509 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 CCDC157Q569K6 752 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 FIGNQ5HY92 759 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 ERMARDQ5T6L9 678 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 OXR1Q8N573 874 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 CPLX3Q8WVH0 158 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 GATA6Q92908 595 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 HMCESQ96FZ2 354 aa21.08■□□□□ 0.97
CLN3-219ENST00000565778 LRIG1Q96JA1 1093 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms