RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 HEPHQ9BQS7 1158 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 SLC17A9Q9BYT1 436 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 ZYG11BQ9C0D3 744 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 OSBPL2Q9H1P3 480 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 FADS3Q9Y5Q0 445 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 HS3ST3A1Q9Y663 406 aa17.2■□□□□ 0.34
CLN3-211ENST00000564091 PTPRQQ9UMZ3 2332 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 A6NNZ2 444 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 K7ESM1 405 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 OPA1O60313 960 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 MPOP05164 745 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 ALPPL2P10696 532 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 ADRB3P13945 408 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 GKP32189 559 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 ACVRL1P37023 503 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 CCNHP51946 323 aaPredicted RBP17.19■□□□□ 0.34
CLN3-211ENST00000564091 UBE2HP62256 183 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 RPS21P63220 83 aaKnown RBP17.19■□□□□ 0.34
CLN3-211ENST00000564091 GNA12Q03113 381 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 SLC20A2Q08357 652 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 FZD2Q14332 565 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 RAB6CQ53S08 254 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 KLHDC7AQ5VTJ3 777 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 BNIPLQ7Z465 357 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 PHLDB2Q86SQ0 1253 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 NOP9Q86U38 636 aaKnown RBP17.19■□□□□ 0.34
CLN3-211ENST00000564091 PCDH20Q8N6Y1 951 aaKnown RBP17.19■□□□□ 0.34
CLN3-211ENST00000564091 NAF1Q96HR8 494 aaKnown RBP17.19■□□□□ 0.34
CLN3-211ENST00000564091 FEM1CQ96JP0 617 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 TUBGCP2Q9BSJ2 902 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 TM6SF2Q9BZW4 377 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 CEP44Q9C0F1 390 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 RAB6CQ9H0N0 254 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 HECAQ9UBI9 543 aaPredicted RBP17.19■□□□□ 0.34
CLN3-211ENST00000564091 TMEM59LQ9UK28 342 aa17.19■□□□□ 0.34
CLN3-211ENST00000564091 HELZ2Q9BYK8 2649 aaKnown RBP17.18■□□□□ 0.34
CLN3-211ENST00000564091 LY6G6EA0A0G2JKS1 128 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 SCAMP1O15126 338 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 CD160O95971 181 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 ITGB7P26010 798 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 L1CAMP32004 1257 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 ATP11AP98196 1134 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 TLE3Q04726 772 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 ACBD5Q5T8D3 534 aaPredicted RBP17.18■□□□□ 0.34
CLN3-211ENST00000564091 CDCP2Q5VXM1 449 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 NAA35Q5VZE5 725 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 KIAA1161Q6NSJ0 714 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 ZNF783Q6ZMS7 281 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 PARS2Q7L3T8 475 aaKnown RBP17.18■□□□□ 0.34
CLN3-211ENST00000564091 SPACA3Q8IXA5 215 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 EMC1Q8N766 993 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 OR6K2Q8NGY2 324 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 IFT43Q96FT9 208 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 NAA15Q9BXJ9 866 aaKnown RBP17.18■□□□□ 0.34
CLN3-211ENST00000564091 NDFIP2Q9NV92 336 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 NLGN3Q9NZ94 848 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 U3KQA8 63 aa17.18■□□□□ 0.34
CLN3-211ENST00000564091 NEMP2A6NFY4 417 aa17.17■□□□□ 0.34
CLN3-211ENST00000564091 IGLON5A6NGN9 336 aa17.17■□□□□ 0.34
CLN3-211ENST00000564091 PES1O00541 588 aaKnown RBP17.17■□□□□ 0.34
CLN3-211ENST00000564091 ATXN7O15265 892 aaPredicted RBP17.17■□□□□ 0.34
CLN3-211ENST00000564091 ZIC2O95409 532 aaPredicted RBP17.17■□□□□ 0.34
CLN3-211ENST00000564091 MMEP08473 750 aa17.17■□□□□ 0.34
CLN3-211ENST00000564091 HNRNPKP61978 463 aaKnown RBP eCLIP17.17■□□□□ 0.34
CLN3-211ENST00000564091 TPRG1LQ5T0D9 272 aa17.17■□□□□ 0.34
CLN3-211ENST00000564091 KYAT3Q6YP21 454 aaKnown RBP17.17■□□□□ 0.34
CLN3-211ENST00000564091 DCP2Q8IU60 420 aaKnown RBP17.17■□□□□ 0.34
CLN3-211ENST00000564091 FAM114A1Q8IWE2 563 aa17.17■□□□□ 0.34
CLN3-211ENST00000564091 RYBPQ8N488 228 aaPredicted RBP17.17■□□□□ 0.34
CLN3-211ENST00000564091 FAM181AQ8N9Y4 354 aa17.17■□□□□ 0.34
CLN3-211ENST00000564091 KLF6Q99612 283 aaPredicted RBP17.17■□□□□ 0.34
CLN3-211ENST00000564091 MAGEB5Q9BZ81 275 aa17.17■□□□□ 0.34
CLN3-211ENST00000564091 ZDHHC6Q9H6R6 413 aa17.17■□□□□ 0.34
CLN3-211ENST00000564091 METTL5Q9NRN9 209 aaKnown RBP17.17■□□□□ 0.34
CLN3-211ENST00000564091 GPR27Q9NS67 375 aa17.17■□□□□ 0.34
CLN3-211ENST00000564091 IPO11Q9UI26 975 aaKnown RBP17.17■□□□□ 0.34
CLN3-211ENST00000564091 KLF15Q9UIH9 416 aa17.17■□□□□ 0.34
CLN3-211ENST00000564091 SPTY2D1-AS1A0A0U1RR47 76 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 C16orf96A6NNT2 1141 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 SPINT1O43278 529 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 USP12O75317 370 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 CSO75390 466 aaKnown RBP17.16■□□□□ 0.34
CLN3-211ENST00000564091 C1QL1O75973 258 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 LSM8O95777 96 aaKnown RBP17.16■□□□□ 0.34
CLN3-211ENST00000564091 CSF2P04141 144 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 UCHL3P15374 230 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 ABL2P42684 1182 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 RABIFP47224 123 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 NOMO3P69849 1222 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 CXADRP78310 365 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 GABREP78334 506 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 C19orf57Q0VDD7 668 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 SGCGQ13326 291 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 PDE1CQ14123 709 aaPredicted RBP17.16■□□□□ 0.34
CLN3-211ENST00000564091 DPCR1Q3MIW9 517 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 RWDD4Q6NW29 188 aaKnown RBP17.16■□□□□ 0.34
CLN3-211ENST00000564091 LEKR1Q6ZMV7 388 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 GPR155Q7Z3F1 870 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 ZNF548Q8NEK5 533 aaPredicted RBP17.16■□□□□ 0.34
CLN3-211ENST00000564091 FAM174AQ8TBP5 190 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms