RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 APTXQ7Z2E3 356 aaKnown RBP17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 ABI3BPQ7Z7G0 1075 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 FAM72BQ86X60 149 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 DRC7Q8IY82 874 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 CACTIN-AS1Q8N1I8 211 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 C3orf20Q8ND61 904 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 ANKRD20A12PQ8NF67 263 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 MDM1Q8TC05 714 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 ARHGEF2Q92974 986 aaKnown RBP17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 VOPP1Q96AW1 172 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 IFT43Q96FT9 208 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 LRIG1Q96JA1 1093 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 GBP4Q96PP9 640 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 GPR27Q9NS67 375 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 NDFIP2Q9NV92 336 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 ADAM22Q9P0K1 906 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 ZFR2Q9UPR6 939 aaKnown RBP17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 GPSM3Q9Y4H4 160 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 HS3ST3A1Q9Y663 406 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 CACNA1GO43497 2377 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 SIGLEC16A6NMB1 481 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 SLC31A1O15431 190 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 LRIG2O94898 1065 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 CALB1P05937 261 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 PLEKP08567 350 aaPredicted RBP17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 THEGLP0DJG4 465 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 ACVRL1P37023 503 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 CCNHP51946 323 aaPredicted RBP17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 DNAJC3Q13217 504 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 NCAPHQ15003 741 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 CDO1Q16878 200 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 PROX2Q3B8N5 592 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 KIAA1161Q6NSJ0 714 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 WDR59Q6PJI9 974 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 SASS6Q6UVJ0 657 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 MON1BQ7L1V2 547 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 NEK11Q8NG66 645 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 GRIN3AQ8TCU5 1115 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 FAM172AQ8WUF8 416 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 HSD3B7Q9H2F3 369 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 RALYQ9UKM9 306 aaKnown RBP17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 CA5BQ9Y2D0 317 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 FADS3Q9Y5Q0 445 aa17.54■□□□□ 0.4
VPS9D1-203ENST00000563798 ZFYVE26Q68DK2 2539 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 DOCK9Q9BZ29 2069 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 PCDH8O95206 1070 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 GSRP00390 522 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 ADRB3P13945 408 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 PRLRP16471 622 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 CKMT2P17540 419 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 GPD1P21695 349 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 ACP1P24666 158 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 RPS21P63220 83 aaKnown RBP17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 C1QBPQ07021 282 aaKnown RBP17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 ZNF211Q13398 564 aaPredicted RBP17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 STX1AQ16623 288 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 FBXL19Q6PCT2 694 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 PHLDB2Q86SQ0 1253 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 MARCH9Q86YJ5 346 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 DCP2Q8IU60 420 aaKnown RBP17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 SLC25A45Q8N413 288 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 CCDC185Q8N715 623 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 ASB12Q8WXK4 309 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 RFFLQ8WZ73 363 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 RAB7BQ96AH8 199 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 TBC1D31Q96DN5 1066 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 FEM1CQ96JP0 617 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 SELENOOQ9BVL4 669 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 LHX6Q9UPM6 363 aa17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 FCF1Q9Y324 198 aaKnown RBP17.53■□□□□ 0.4
VPS9D1-203ENST00000563798 ITPR1Q14643 2758 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 ARID1BQ8NFD5 2236 aaPredicted RBP17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 FAM149AA5PLN7 773 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 KDELR3O43731 214 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 RAMP2O60895 175 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 GJB6O95452 261 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 ZNF143P52747 638 aaPredicted RBP17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 UBXN1Q04323 297 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 PPP1R15BQ5SWA1 713 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 SEL1L3Q68CR1 1132 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 RWDD4Q6NW29 188 aaKnown RBP17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 GCNT7Q6ZNI0 430 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 SLFN11Q7Z7L1 901 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 OR13H1Q8NG92 308 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 OR2AP1Q8NGE2 309 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 CASKIN2Q8WXE0 1202 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 KLK6Q92876 244 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 BMFQ96LC9 184 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 LENG8Q96PV6 779 aaPredicted RBP17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 AGPAT1Q99943 283 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 SLC17A9Q9BYT1 436 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 MAGEB5Q9BZ81 275 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 SCUBE2Q9NQ36 999 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 HECAQ9UBI9 543 aaPredicted RBP17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 DNAI1Q9UI46 699 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 HPCAL4Q9UM19 191 aa17.52■□□□□ 0.4
VPS9D1-203ENST00000563798 APC2O95996 2303 aa17.52■□□□□ 0.39
VPS9D1-203ENST00000563798 ZSCAN5CA6NGD5 496 aaPredicted RBP17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 A6NNZ2 444 aa17.51■□□□□ 0.39
VPS9D1-203ENST00000563798 TSPAN6O43657 245 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms