RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 ITGB2P05107 769 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 TFE3P19532 575 aaPredicted RBP10.59□□□□□ -0.71
SF3B3-204ENST00000563739 NDUFA8P51970 172 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 C1orf61Q13536 156 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 DCAF17Q5H9S7 520 aaPredicted RBP10.59□□□□□ -0.71
SF3B3-204ENST00000563739 LINGO4Q6UY18 593 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 DPY19L3Q6ZPD9 716 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 DTX1Q86Y01 620 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 SFTPA2Q8IWL1 248 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 KYQ8NBH2 561 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 GRIN3AQ8TCU5 1115 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 LMX1AQ8TE12 382 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 CCDC97Q96F63 343 aaPredicted RBP10.59□□□□□ -0.71
SF3B3-204ENST00000563739 C1QTNF2Q9BXJ5 285 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 FAM117AQ9C073 453 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 ABCG4Q9H172 646 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 EPN3Q9H201 632 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 TNKS2Q9H2K2 1166 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 SLC25A13Q9UJS0 675 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 KIAA1257Q9ULG3 409 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 VANGL2Q9ULK5 521 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 CNTN6Q9UQ52 1028 aa10.59□□□□□ -0.71
SF3B3-204ENST00000563739 CSMD1Q96PZ7 3565 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 ARHGEF17Q96PE2 2063 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-204ENST00000563739 A0A0D9SEW6 157 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 TRIM49BA6NDI0 452 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 NEMP2A6NFY4 417 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 SLC16A3O15427 465 aaKnown RBP10.58□□□□□ -0.72
SF3B3-204ENST00000563739 LEFTY1O75610 366 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 PAK4O96013 591 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-204ENST00000563739 MYL1P05976 194 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 ZSCAN22P10073 491 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-204ENST00000563739 ADRB3P13945 408 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 JUNDP17535 347 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 ITIH1P19827 911 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 CR2P20023 1033 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 PDE1CQ14123 709 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-204ENST00000563739 NR0B2Q15466 257 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 ACCSLQ4AC99 568 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 ARSIQ5FYB1 569 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 TTC39BQ5VTQ0 682 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-204ENST00000563739 HIST2H2BCQ6DN03 193 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 ZNF574Q6ZN55 896 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-204ENST00000563739 TMEM110Q86TL2 294 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 CCDC117Q8IWD4 279 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-204ENST00000563739 WDTC1Q8N5D0 677 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 PMEPA1Q969W9 287 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 PPP1R13BQ96KQ4 1090 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 RPRD1AQ96P16 312 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-204ENST00000563739 SLC17A9Q9BYT1 436 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 FOXP3Q9BZS1 431 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 DNAI2Q9GZS0 605 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 POPDC2Q9HBU9 364 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 TMPRSS4Q9NRS4 437 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 VPS28Q9UK41 221 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 FARP1Q9Y4F1 1045 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-204ENST00000563739 PCDHB4Q9Y5E5 795 aa10.58□□□□□ -0.72
SF3B3-204ENST00000563739 HEMK1Q9Y5R4 338 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-204ENST00000563739 C2CD3Q4AC94 2353 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 PRAMEF33A0A0G2JMD5 474 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 C9orf172C9J069 976 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 LMO7DNF2Z398 122 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 PMM2O15305 246 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 AP1G1O43747 822 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 PRAMEF10O60809 474 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 PCDH8O95206 1070 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 HSP90AA1P07900 732 aaKnown RBP10.57□□□□□ -0.72
SF3B3-204ENST00000563739 LIPCP11150 499 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 EPB41P11171 864 aaKnown RBP10.57□□□□□ -0.72
SF3B3-204ENST00000563739 GP1BBP13224 206 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 CMA1P23946 247 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 TBXAS1P24557 533 aaPredicted RBP10.57□□□□□ -0.72
SF3B3-204ENST00000563739 ITGB7P26010 798 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 RPL13P26373 211 aaKnown RBP10.57□□□□□ -0.72
SF3B3-204ENST00000563739 NNMTP40261 264 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 PRCPP42785 496 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 FMO5P49326 533 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 FOXK1P85037 733 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 HS1BP3Q53T59 392 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 TCERG1LQ5VWI1 586 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 ZFAND4Q86XD8 727 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 DCP2Q8IU60 420 aaKnown RBP10.57□□□□□ -0.72
SF3B3-204ENST00000563739 PHACTR4Q8IZ21 702 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 DEFB106AQ8N104 65 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 ARL14Q8N4G2 192 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 ATP6V0D2Q8N8Y2 350 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 DCAF4L2Q8NA75 395 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 OR7D4Q8NG98 312 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 CCDC74AQ96AQ1 378 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 TBATAQ96M53 351 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 LENG8Q96PV6 779 aaPredicted RBP10.57□□□□□ -0.72
SF3B3-204ENST00000563739 PSMG3-AS1Q96PY0 264 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 EPB41L5Q9HCM4 733 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.57□□□□□ -0.72
SF3B3-204ENST00000563739 APOBEC3BQ9UH17 382 aaKnown RBP10.57□□□□□ -0.72
SF3B3-204ENST00000563739 LRBAP50851 2863 aa10.57□□□□□ -0.72
SF3B3-204ENST00000563739 IGLON5A6NGN9 336 aa10.56□□□□□ -0.72
SF3B3-204ENST00000563739 YY2O15391 372 aa10.56□□□□□ -0.72
SF3B3-204ENST00000563739 STX10O60499 249 aa10.56□□□□□ -0.72
SF3B3-204ENST00000563739 PAGE1O75459 146 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms