RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 PLPP6Q8IY26 295 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 PYROXD2Q8N2H3 581 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 CHCHD4Q8N4Q1 142 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 OXR1Q8N573 874 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 DONSONQ9NYP3 566 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 TAS2R14Q9NYV8 317 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 ARHGAP20Q9P2F6 1191 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 FZD10Q9ULW2 581 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 USP24Q9UPU5 2620 aa17.17■□□□□ 0.34
CLK3-210ENST00000563112 A0A1W2PQU0 124 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 WNT9AO14904 365 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 KDELR3O43731 214 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 ZNF821O75541 412 aaPredicted RBP17.16■□□□□ 0.34
CLK3-210ENST00000563112 PCDH8O95206 1070 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 PROS1P07225 676 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 GZMAP12544 262 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 PSMA2P25787 234 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 PRKCIP41743 596 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 CCNHP51946 323 aaPredicted RBP17.16■□□□□ 0.34
CLK3-210ENST00000563112 NEK3P51956 506 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 NXPH1P58417 271 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 YBEYP58557 167 aaPredicted RBP17.16■□□□□ 0.34
CLK3-210ENST00000563112 TAS2R38P59533 333 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 SNRPD1P62314 119 aaKnown RBP17.16■□□□□ 0.34
CLK3-210ENST00000563112 MAMLD1Q13495 774 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 PLEKHA7Q6IQ23 1121 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 FBXL19Q6PCT2 694 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 RTL3Q8N8U3 475 aaKnown RBP17.16■□□□□ 0.34
CLK3-210ENST00000563112 BAHD1Q8TBE0 780 aaPredicted RBP17.16■□□□□ 0.34
CLK3-210ENST00000563112 ADAMTS14Q8WXS8 1223 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 ZDHHC6Q9H6R6 413 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 CBX8Q9HC52 389 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 HECAQ9UBI9 543 aaPredicted RBP17.16■□□□□ 0.34
CLK3-210ENST00000563112 MSRB2Q9Y3D2 182 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 WASF2Q9Y6W5 498 aa17.16■□□□□ 0.34
CLK3-210ENST00000563112 KMT2BQ9UMN6 2715 aaPredicted RBP17.16■□□□□ 0.34
CLK3-210ENST00000563112 AKAP13Q12802 2813 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 GOLGA6L19H0YKK7 550 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 FGF10O15520 208 aaPredicted RBP17.15■□□□□ 0.34
CLK3-210ENST00000563112 BUB1O43683 1085 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 FTLP02792 175 aaPredicted RBP17.15■□□□□ 0.34
CLK3-210ENST00000563112 ITGAVP06756 1048 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 ITGB7P26010 798 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 HTR7P34969 479 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 IL9RQ01113 521 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 FIGNQ5HY92 759 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 PRAMEF14Q5SWL7 426 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 ZNF571Q7Z3V5 609 aaPredicted RBP17.15■□□□□ 0.34
CLK3-210ENST00000563112 RAB44Q7Z6P3 723 aaPredicted RBP17.15■□□□□ 0.34
CLK3-210ENST00000563112 HORMAD1Q86X24 394 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 PNPLA1Q8N8W4 532 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 CASKIN2Q8WXE0 1202 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 TRIM11Q96F44 468 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 LRIG1Q96JA1 1093 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 TM6SF2Q9BZW4 377 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 ERVMER34-1Q9H9K5 563 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 KLK13Q9UKR3 277 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 NEU3Q9UQ49 428 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 BTBD3Q9Y2F9 522 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 IGF2RP11717 2491 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 TP53BP1Q12888 1972 aaPredicted RBP17.15■□□□□ 0.34
CLK3-210ENST00000563112 CHD5Q8TDI0 1954 aa17.15■□□□□ 0.34
CLK3-210ENST00000563112 C1QTNF9BB2RNN3 333 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 EIF3CLB5ME19 914 aaKnown RBP17.14■□□□□ 0.33
CLK3-210ENST00000563112 SLC31A1O15431 190 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 TNFSF14O43557 240 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 RNF8O76064 485 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 CD160O95971 181 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 GSRP00390 522 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 C1QTNF9P0C862 333 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 AKT2P31751 481 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 TPI1P60174 286 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 FANCCQ00597 558 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 OGDHQ02218 1023 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 RAD51Q06609 339 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 SLCO6A1Q86UG4 719 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 LUZP1Q86V48 1076 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 OR2AP1Q8NGE2 309 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 KLK6Q92876 244 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 KLHDC7BQ96G42 594 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 FEM1CQ96JP0 617 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 EIF3CQ99613 913 aaKnown RBP17.14■□□□□ 0.33
CLK3-210ENST00000563112 TTYH3Q9C0H2 523 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 FTSJ1Q9UET6 329 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 CNOT8Q9UFF9 292 aaKnown RBP17.14■□□□□ 0.33
CLK3-210ENST00000563112 ACTL7AQ9Y615 435 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 SCINQ9Y6U3 715 aa17.14■□□□□ 0.33
CLK3-210ENST00000563112 DOCK9Q9BZ29 2069 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 FAM221BA6H8Z2 402 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 TMEM8BA6NDV4 472 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 TMEM191CA6NGB0 347 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 GOLGA8CPA6NN73 597 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 WASH4PA8MWX3 477 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 RASA4BC9J798 803 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 KRIT1O00522 736 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 DDX3XO00571 662 aaKnown RBP eCLIP17.13■□□□□ 0.33
CLK3-210ENST00000563112 ATMINO43313 823 aaPredicted RBP17.13■□□□□ 0.33
CLK3-210ENST00000563112 RASA4O43374 803 aa17.13■□□□□ 0.33
CLK3-210ENST00000563112 POP4O95707 220 aaKnown RBP17.13■□□□□ 0.33
CLK3-210ENST00000563112 ATXN1LP0C7T5 689 aaKnown RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms