RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CARD16Q5EG05 197 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 TEX26Q8N6G2 289 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 TSEN2Q8NCE0 465 aaKnown RBP22.13■■□□□ 1.13
SNX1-210ENST00000560260 CCNYQ8ND76 341 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 OR6K2Q8NGY2 324 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 NELL1Q92832 810 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 WASF2Q9Y6W5 498 aa22.13■■□□□ 1.13
SNX1-210ENST00000560260 MATN3O15232 486 aa22.12■■□□□ 1.13
SNX1-210ENST00000560260 TJP3O95049 919 aa22.12■■□□□ 1.13
SNX1-210ENST00000560260 ZBTB17Q13105 803 aa22.12■■□□□ 1.13
SNX1-210ENST00000560260 SIX1Q15475 284 aaPredicted RBP22.12■■□□□ 1.13
SNX1-210ENST00000560260 CCDC181Q5TID7 509 aa22.12■■□□□ 1.13
SNX1-210ENST00000560260 KIAA1324Q6UXG2 1013 aaKnown RBP22.12■■□□□ 1.13
SNX1-210ENST00000560260 ZC3H18Q86VM9 953 aaKnown RBP22.12■■□□□ 1.13
SNX1-210ENST00000560260 TMPRSS6Q8IU80 811 aa22.12■■□□□ 1.13
SNX1-210ENST00000560260 MMAAQ8IVH4 418 aaKnown RBP22.12■■□□□ 1.13
SNX1-210ENST00000560260 OR2AP1Q8NGE2 309 aa22.12■■□□□ 1.13
SNX1-210ENST00000560260 FATE1Q969F0 183 aa22.12■■□□□ 1.13
SNX1-210ENST00000560260 NSMCE3Q96MG7 304 aa22.12■■□□□ 1.13
SNX1-210ENST00000560260 QKIQ96PU8 341 aaKnown RBP eCLIP22.12■■□□□ 1.136e-10■■□□□ 13.4
SNX1-210ENST00000560260 CINPQ9BW66 212 aaPredicted RBP22.12■■□□□ 1.13
SNX1-210ENST00000560260 C10orf88Q9H8K7 445 aa22.12■■□□□ 1.13
SNX1-210ENST00000560260 EBF1Q9UH73 591 aa22.12■■□□□ 1.13
SNX1-210ENST00000560260 SARDHQ9UL12 918 aa22.12■■□□□ 1.13
SNX1-210ENST00000560260 KCNK1O00180 336 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 PPP1R12AO14974 1030 aaPredicted RBP22.11■■□□□ 1.13
SNX1-210ENST00000560260 MCF2LO15068 1137 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 INSIG1O15503 277 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 CEP104O60308 925 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 ALDH1A2O94788 518 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 AP1B1Q10567 949 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 TCF15Q12870 199 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 ZNF776Q68DI1 518 aaPredicted RBP22.11■■□□□ 1.13
SNX1-210ENST00000560260 TIGD7Q6NT04 549 aaPredicted RBP22.11■■□□□ 1.13
SNX1-210ENST00000560260 ADAT2Q7Z6V5 191 aaKnown RBP22.11■■□□□ 1.13
SNX1-210ENST00000560260 METTL3Q86U44 580 aaKnown RBP22.11■■□□□ 1.13
SNX1-210ENST00000560260 OR8D1Q8WZ84 308 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 PSKH2Q96QS6 385 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 CEP41Q9BYV8 373 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 FBRSQ9HAH7 460 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 BCCIPQ9P287 314 aaKnown RBP eCLIP22.11■■□□□ 1.13
SNX1-210ENST00000560260 HECAQ9UBI9 543 aaPredicted RBP22.11■■□□□ 1.13
SNX1-210ENST00000560260 SEPT3Q9UH03 358 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 SNX12Q9UMY4 172 aa22.11■■□□□ 1.13
SNX1-210ENST00000560260 TTC24A2A3L6 582 aaPredicted RBP22.1■■□□□ 1.13
SNX1-210ENST00000560260 AXIN1O15169 862 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 MSNP26038 577 aaKnown RBP22.1■■□□□ 1.13
SNX1-210ENST00000560260 CHRNA3P32297 505 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 MMP13P45452 471 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 PSMD8P48556 350 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 MAXP61244 160 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 IFI35P80217 286 aaPredicted RBP22.1■■□□□ 1.13
SNX1-210ENST00000560260 HNRNPDQ14103 355 aaKnown RBP22.1■■□□□ 1.13
SNX1-210ENST00000560260 ZNF235Q14590 738 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 WDR5BQ86VZ2 330 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 PLPP6Q8IY26 295 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 COG1Q8WTW3 980 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 TRIM44Q96DX7 344 aaPredicted RBP22.1■■□□□ 1.13
SNX1-210ENST00000560260 SIPA1Q96FS4 1042 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 GDAP1L1Q96MZ0 367 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 IL12RB2Q99665 862 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 EVLQ9UI08 416 aaPredicted RBP22.1■■□□□ 1.13
SNX1-210ENST00000560260 PPM1HQ9ULR3 514 aa22.1■■□□□ 1.13
SNX1-210ENST00000560260 ALOX15BO15296 676 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 IGSF6O95976 241 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 HLA-DQB2P05538 268 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 CCNB1P14635 433 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 CR2P20023 1033 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 SNRPD1P62314 119 aaKnown RBP22.09■■□□□ 1.13
SNX1-210ENST00000560260 ZNF33AQ06730 810 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 CST6Q15828 149 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 ZNF528Q3MIS6 628 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 MARC1Q5VT66 337 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 BZW1Q7L1Q6 419 aaKnown RBP22.09■■□□□ 1.13
SNX1-210ENST00000560260 PGBD3Q8N328 593 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 RYBPQ8N488 228 aaPredicted RBP22.09■■□□□ 1.13
SNX1-210ENST00000560260 CNTD1Q8N815 330 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 PIP4K2CQ8TBX8 421 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 GRIN3AQ8TCU5 1115 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 TFB1MQ8WVM0 346 aaKnown RBP22.09■■□□□ 1.13
SNX1-210ENST00000560260 ATG4AQ8WYN0 398 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 PRCCQ92733 491 aaPredicted RBP22.09■■□□□ 1.13
SNX1-210ENST00000560260 CCDC114Q96M63 670 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 OSBPL9Q96SU4 736 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 MGME1Q9BQP7 344 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 BRD8Q9H0E9 1235 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 ZDHHC6Q9H6R6 413 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 NT5MQ9NPB1 228 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 SMARCAL1Q9NZC9 954 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 SERGEFQ9UGK8 458 aa22.09■■□□□ 1.13
SNX1-210ENST00000560260 H0Y858 1186 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 PLK4O00444 970 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 MID1O15344 667 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 FGGP02679 453 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 RECQLP46063 649 aaPredicted RBP22.08■■□□□ 1.13
SNX1-210ENST00000560260 EIF3EP60228 445 aaKnown RBP22.08■■□□□ 1.13
SNX1-210ENST00000560260 SRSF5Q13243 272 aaKnown RBP22.08■■□□□ 1.13
SNX1-210ENST00000560260 XRCC4Q13426 336 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 MYLK3Q32MK0 819 aa22.08■■□□□ 1.13
SNX1-210ENST00000560260 POM121L1PQ3SYA9 428 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms